View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_10 (Length: 536)
Name: NF11809_low_10
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 4310791 - 4311132
Alignment:
| Q |
19 |
tttaatcatcatgcttgtttcattaaattccaggttgtgcattctaagaccttttctttttaataacacaactcttatactattaaatgtatccgttatt |
118 |
Q |
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| T |
4310791 |
tttaatcatcatgcttgtttcattaaattccagggtgtgcattctaagaccttttctttttaataacgcaactcttatactattaaatgtatacgttatc |
4310890 |
T |
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| Q |
119 |
gtccactaagtgaataaaattcactttcgatacgacatctctaaatgcaactccctctagagttttatgatttgtttccaaaatttgattcaagtagtct |
218 |
Q |
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| T |
4310891 |
gtccactaagtgaataaaattcactttcgatacgacatctctaaatgcaactccctctagagttttatgatttgtctccaaaatttgattcaagtagtct |
4310990 |
T |
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| Q |
219 |
aatccaaagacaattacagaaattggtttcacaagacccttnnnnnnnnnctacgagtgtaactagaactagctgcaaaactgggtccgtccagctcttt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4310991 |
aatccaaagacaattacagaaattggtttcacaagacccttaaaagaaaactacgagtgtaactagaactagctgcaaaactgggtccgtccagctcttt |
4311090 |
T |
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| Q |
319 |
actcattcacaactgataacttatatgcaatatatgtaccaa |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
4311091 |
actcattcacaactgataacttatatgcaatatatgtaccaa |
4311132 |
T |
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