View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_100 (Length: 237)
Name: NF11809_low_100
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_100 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 29631903 - 29632126
Alignment:
| Q |
14 |
gtgtttgctcttgtactgacgcccacccgcgagcttgcggttcagctggctcaccagttttggatccttgggtcctcgctccgcctcatccttacggtgg |
113 |
Q |
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| T |
29631903 |
gtgtttgctcttgtactgacgcccacccgcgagcttgcggttcagctggctcaccagttttggatccttgggtcctcgctccgcctcatccttacggtgg |
29632002 |
T |
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| Q |
114 |
ttgtgggtggtttagacaaacgtatacaggcaaaacaattggtagccaggcctaaccttgttatcgccactccagagaggctcaaagttttgcttcagga |
213 |
Q |
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| T |
29632003 |
ttgtgggtggtttagacaaacgtattcaggcaaaacaattggtagccaggcctaaccttgttatcgccactccagagaggctcaaaattttgcttcagga |
29632102 |
T |
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| Q |
214 |
taatcctgaaatcgctcctatttt |
237 |
Q |
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| T |
29632103 |
taatcctgaaatcgctcctatttt |
29632126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 29630796 - 29631019
Alignment:
| Q |
14 |
gtgtttgctcttgtactgacgcccacccgcgagcttgcggttcagctggctcaccagttttggatccttgggtcctcgctccgcctcatccttacggtgg |
113 |
Q |
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||||||||||| || ||||||||||| |||||||||||| |||||||||| ||||||||| | ||||||||||||||||| || || ||||||||| | |
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| T |
29630796 |
gtgtttgctctcgtgctgacgcccacgcgcgagcttgcgattcagctggcagaccagtttttggcccttgggtcctcgctcctccccagccttacggttg |
29630895 |
T |
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| Q |
114 |
ttgtgggtggtttagacaaacgtatacaggcaaaacaattggtagccaggcctaaccttgttatcgccactccagagaggctcaaagttttgcttcagga |
213 |
Q |
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| T |
29630896 |
ttgtgggtgattatgacagtcctacacaggcaaaataattggtagccagtcctcaccttgttatcgccactccagagaggctcagagttttgcttctgga |
29630995 |
T |
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| Q |
214 |
taatcctgaaatcgctcctatttt |
237 |
Q |
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| T |
29630996 |
taatcctgaaatcgctactatttt |
29631019 |
T |
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Back To:
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