View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_105 (Length: 230)
Name: NF11809_low_105
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_105 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 11551851 - 11551658
Alignment:
| Q |
18 |
agacccaagagcaagaggtgccaacaaagatataacaggcaagtatctgaaataacaagaatcaagtcttatccttgtaaacggggtcggctgcatggat |
117 |
Q |
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| T |
11551851 |
agacccaagagcaagaggtaccaacaaagatataacaggcaagtatctgaaataacaagaatcaagtcttatccttgtaaacggggtcggctgcatggat |
11551752 |
T |
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| Q |
118 |
taaacgatgccatatggttttatcatgtaacagaaacataatatcaaaaccaagctaataaatgttgttgtagcagagaacggaaaccacaaag |
211 |
Q |
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| T |
11551751 |
taaacgatgccatatggttttatcatgtaacagaaacataatatcaaaaccaagctaataaatgttgttgtagcagagaacggaaaccacaaag |
11551658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 11546979 - 11546799
Alignment:
| Q |
29 |
caagaggtgccaacaaagatataaca-ggcaagtatctgaaataacaagaatcaagtcttatccttgtaaacggggtcggctgcatggattaaacgatgc |
127 |
Q |
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| T |
11546979 |
caagaggtgccaataa-gatataacaaggcaagtatccaaaataacaagaaccaagttttatccttgtaaatggcatcgg-tgaatggattaaacgacgc |
11546882 |
T |
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| Q |
128 |
catatggttttatcatgtaacagaaacataatatcaaaaccaagctaataaatgttgttgtagcagagaacggaaaccacaaa |
210 |
Q |
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| T |
11546881 |
cataaggttttatcatataacataaacttaaaataaaaaccaagctaaaaaatgtcactgtagcagagaacggaaaccacaaa |
11546799 |
T |
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