View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_109 (Length: 217)
Name: NF11809_low_109
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_109 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 14270941 - 14271128
Alignment:
| Q |
16 |
gaagaagcctctgaggacatggagataggaaaatgaaccttaaccattgaagaatgaggtttgatgaatgtataggtaaaagggtgcatgaaggagaagt |
115 |
Q |
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| T |
14270941 |
gaagaagcctctgaggacatggagatcggaaaatgaaccttaaccattgaagaatgaggtttgatgaatgtataggtaaaagggtgcatgaaggagaagt |
14271040 |
T |
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| Q |
116 |
tagccatgatgaagtagaagacatggttaaaagattataacgtgatgataattaatatggtttcatgttatatgttgcgtaaaatatg |
203 |
Q |
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| T |
14271041 |
tagccatgatgaagtagaagacatggttaaaagattataacgtgatgataattaatatggtttcatgttatatgttgtgtgaaatatg |
14271128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 14305477 - 14305607
Alignment:
| Q |
18 |
agaagcctctgaggacatggagataggaaaatgaaccttaaccattgaagaatga-----ggttt-------gatgaatgtataggtaaaagggtgcatg |
105 |
Q |
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| T |
14305477 |
agaagtctctgaggacaaggagataggaaaatgaaccttaaccattgaagaatgaattgtggtgtagaagaagatgaatgtaaaggtaaaagggtgcatg |
14305576 |
T |
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| Q |
106 |
aaggagaagttagccatgatgaagtagaaga |
136 |
Q |
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| T |
14305577 |
aaggagaagttagccatgcagaagtagaaga |
14305607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 14283717 - 14283849
Alignment:
| Q |
16 |
gaagaagcctctgaggacatggagataggaaaatgaaccttaaccattgaagaatga-----ggttt-------gatgaatgtataggtaaaagggtgca |
103 |
Q |
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| T |
14283717 |
gaagaagtctctgaggacaaggagataggaaaatgaaccttaaccattgaagtatgaattgtggtgtagaggaagatgaatgtataggtaaaagggtgca |
14283816 |
T |
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| Q |
104 |
tgaaggagaagttagccatgatgaagtagaaga |
136 |
Q |
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| T |
14283817 |
tgaaggagaagttagccatgcagaagaagaaga |
14283849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 14321867 - 14322040
Alignment:
| Q |
17 |
aagaagcctctgaggacatggagataggaaaatgaaccttaaccattgaagaatgaggtttg------------atgaatgtataggtaaaagggtgcat |
104 |
Q |
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| T |
14321867 |
aagaagtctctgaggacatggagatagcaaaatgaaccttaaccattgaattatgagttctggtgtagaggaagatgaatctacaggtaaaagggtgcat |
14321966 |
T |
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| Q |
105 |
gaaggagaagttagccatgatgaagtagaagacatggttaaaagattataacgtgatgataattaatatggtttcat |
181 |
Q |
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| T |
14321967 |
gaaggagaagttagccatgaagaagt---agacattgttaaaagattattatgtgatgaaaactgataaggtttcat |
14322040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 25886610 - 25886679
Alignment:
| Q |
78 |
gatgaatgtataggtaaaagggtgcatgaaggagaagttagccatgatgaagtagaagacatggttaaaa |
147 |
Q |
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| T |
25886610 |
gatgaatctataggtaaaagggtgcatgaaggagaagttagccatgaagaagaagaagacatggttaaaa |
25886679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 44350468 - 44350525
Alignment:
| Q |
88 |
taggtaaaagggtgcatgaaggagaagttagccatgatgaagtagaagacatggttaaaag |
148 |
Q |
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| T |
44350468 |
taggtaaaagggtgcatgaaggagaagttagcc---atgaagaagaagacatggttaaaag |
44350525 |
T |
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