View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11809_low_110 (Length: 214)

Name: NF11809_low_110
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11809_low_110
NF11809_low_110
[»] scaffold0169 (1 HSPs)
scaffold0169 (8-214)||(25009-25213)
[»] chr8 (2 HSPs)
chr8 (8-77)||(4442795-4442864)
chr8 (165-214)||(32731310-32731359)
[»] chr4 (6 HSPs)
chr4 (8-72)||(8365876-8365941)
chr4 (8-50)||(8381866-8381908)
chr4 (165-214)||(32335853-32335902)
chr4 (165-214)||(32336074-32336123)
chr4 (165-210)||(47645449-47645494)
chr4 (170-214)||(47487841-47487885)
[»] chr2 (7 HSPs)
chr2 (75-142)||(20188386-20188453)
chr2 (165-214)||(19194081-19194130)
chr2 (163-214)||(5326203-5326254)
chr2 (163-214)||(20193222-20193273)
chr2 (163-214)||(45231565-45231616)
chr2 (93-139)||(20193156-20193202)
chr2 (165-214)||(35935375-35935424)
[»] chr5 (3 HSPs)
chr5 (80-148)||(21550100-21550168)
chr5 (74-142)||(21550274-21550341)
chr5 (172-214)||(21550037-21550079)
[»] chr1 (3 HSPs)
chr1 (163-214)||(46209533-46209584)
chr1 (93-139)||(46208087-46208133)
chr1 (76-140)||(46209447-46209512)
[»] chr7 (3 HSPs)
chr7 (163-214)||(28087748-28087799)
chr7 (163-212)||(1920942-1920991)
chr7 (165-214)||(45782028-45782077)
[»] chr6 (1 HSPs)
chr6 (163-214)||(655533-655584)
[»] chr3 (3 HSPs)
chr3 (82-141)||(46693042-46693101)
chr3 (172-214)||(48743137-48743179)
chr3 (165-214)||(2683198-2683247)
[»] scaffold0010 (1 HSPs)
scaffold0010 (165-214)||(128358-128407)


Alignment Details
Target: scaffold0169 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 8 - 214
Target Start/End: Complemental strand, 25213 - 25009
Alignment:
Q  8 caaaggtgattaagatccatcaaagtaaacactaattaatgtcacgaaaaacaaagctttagttgcaatgggcattgacccgcttaaaatagaagggggt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  25213 caaaggtgattaagatccatcaaagtaaacactaattaatgtcacgaaaaacaaagctttagttgcaatgggcattgacccgctcaaaatagaa-ggggt 25115  T
Q  108 cactgagttgcaaaatgcggtgaagttggggggctaaaaagnnnnnnnnnnnnnnaataggaggccaaaattgctacgtggtcaaacatagggggccaaa 207  Q
    ||||||||||||||||||||||||||||| |||||||||||              |||||||||||||||||||||||||||||||||||||||||||||    
T  25114 cactgagttgcaaaatgcggtgaagttggagggctaaaaag-tttttttttttttaataggaggccaaaattgctacgtggtcaaacatagggggccaaa 25016  T
Q  208 agtgcat 214  Q
    |||||||    
T  25015 agtgcat 25009  T

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Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 4442864 - 4442795
Alignment:
Q  8 caaaggtgattaagatccatcaaagtaaacactaattaatgtcacgaaaaacaaagctttagttgcaatg 77  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||    
T  4442864 caaaggtgattaagatccatcaaagtgaacactagttaatgtcacaaaaaacaaagctttagttgcaatg 4442795  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 32731359 - 32731310
Alignment:
Q  165 taggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  32731359 taggaggccaaaattgttacgatgtcaaacatagggggccaaaagtgcat 32731310  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 8365876 - 8365941
Alignment:
Q  8 caaaggtgattaagatccatcaaagtaaacactaattaatgtcac-gaaaaacaaagctttagttg 72  Q
    |||||||||||| ||||||||||||| |||||||||||||||| |  |||||||||||||||||||    
T  8365876 caaaggtgattatgatccatcaaagtgaacactaattaatgtccctaaaaaacaaagctttagttg 8365941  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 8381866 - 8381908
Alignment:
Q  8 caaaggtgattaagatccatcaaagtaaacactaattaatgtc 50  Q
    |||||||||||| ||||||||||||| ||||||| ||||||||    
T  8381866 caaaggtgattatgatccatcaaagtgaacactagttaatgtc 8381908  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 32335902 - 32335853
Alignment:
Q  165 taggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    |||| ||| ||||||||||||  | |||||||||||||||||||||||||    
T  32335902 tagggggctaaaattgctacggtggcaaacatagggggccaaaagtgcat 32335853  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 32336074 - 32336123
Alignment:
Q  165 taggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    ||||||| ||||||||||| |  | |||||||||||||||||||||||||    
T  32336074 taggaggtcaaaattgctatggtggcaaacatagggggccaaaagtgcat 32336123  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 47645494 - 47645449
Alignment:
Q  165 taggaggccaaaattgctacgtggtcaaacatagggggccaaaagt 210  Q
    |||||||||||||||||||||  | |||||||||||| ||||||||    
T  47645494 taggaggccaaaattgctacgatggcaaacataggggaccaaaagt 47645449  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 47487885 - 47487841
Alignment:
Q  170 ggccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    ||||||||||||||||  | ||||||||||||| |||||||||||    
T  47487885 ggccaaaattgctacgaagccaaacatagggggtcaaaagtgcat 47487841  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 20188453 - 20188386
Alignment:
Q  75 atgggcattgacccgcttaaaatagaagggggtcactgagttgcaaaatgcggtgaagttggggggct 142  Q
    |||||||||||||   | |||||||||||||| ||||||||||||||| | |||||||||||||||||    
T  20188453 atgggcattgacctagtcaaaatagaagggggccactgagttgcaaaagggggtgaagttggggggct 20188386  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 19194130 - 19194081
Alignment:
Q  165 taggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    |||| ||||||||||||||||  | |||||||||||||||||||||||||    
T  19194130 tagggggccaaaattgctacgaagacaaacatagggggccaaaagtgcat 19194081  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 5326254 - 5326203
Alignment:
Q  163 aataggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    ||||||||||||||||||||||   | |||| ||||||||||||||||||||    
T  5326254 aataggaggccaaaattgctacagagccaaatatagggggccaaaagtgcat 5326203  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 20193222 - 20193273
Alignment:
Q  163 aataggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    |||||| |||||||||||||||| || ||||| |||||| ||||||||||||    
T  20193222 aatagggggccaaaattgctacggggccaaacttaggggaccaaaagtgcat 20193273  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 45231565 - 45231616
Alignment:
Q  163 aataggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    |||||| ||||||||||||||||  | | |||||||||||||||||||||||    
T  45231565 aatagggggccaaaattgctacggagcctaacatagggggccaaaagtgcat 45231616  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 20193156 - 20193202
Alignment:
Q  93 aaaatagaagggggtcactgagttgcaaaatgcggtgaagttggggg 139  Q
    |||||||||||||| | ||||||||||||| | ||||||||||||||    
T  20193156 aaaatagaaggggggcgctgagttgcaaaagggggtgaagttggggg 20193202  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 35935424 - 35935375
Alignment:
Q  165 taggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    |||| ||||||||||||||||  | |||| ||||||||||||||||||||    
T  35935424 tagggggccaaaattgctacgacggcaaatatagggggccaaaagtgcat 35935375  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 21550168 - 21550100
Alignment:
Q  80 cattgacccgcttaaaatagaagggggtcactgagttgcaaaatgcggtgaagttggggggctaaaaag 148  Q
    |||||||||| | ||||||||| |||| ||||||||||||||| | |||||| |||||||||| |||||    
T  21550168 cattgacccgttcaaaatagaaaggggccactgagttgcaaaagggggtgaaattggggggctgaaaag 21550100  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 21550274 - 21550341
Alignment:
Q  74 aatgggcattgacccgcttaaaatagaagggggtcactgagttgcaaaatgcggtgaagttggggggct 142  Q
    |||||||||||||||  | ||||||||||||||||| |||||||||||| | | |||||||||||||||    
T  21550274 aatgggcattgacccagtcaaaatagaagggggtcagtgagttgcaaaa-gggatgaagttggggggct 21550341  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 21550079 - 21550037
Alignment:
Q  172 ccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    |||||||||||||| || |||||||||||||||||||||||||    
T  21550079 ccaaaattgctacggggccaaacatagggggccaaaagtgcat 21550037  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 46209533 - 46209584
Alignment:
Q  163 aataggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    |||||||||||||||||||||||  | |||||||||||||| ||||||||||    
T  46209533 aataggaggccaaaattgctacggagccaaacatagggggctaaaagtgcat 46209584  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 46208133 - 46208087
Alignment:
Q  93 aaaatagaagggggtcactgagttgcaaaatgcggtgaagttggggg 139  Q
    ||||||| |||||||||||||||||||||| | ||||||||||||||    
T  46208133 aaaataggagggggtcactgagttgcaaaaaggggtgaagttggggg 46208087  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 46209447 - 46209512
Alignment:
Q  76 tgggcattgacccgcttaaaatagaagggggtcactgagttgcaaaa-tgcggtgaagttgggggg 140  Q
    ||||| |||||||| | ||||||| |||||| |||||||||||||||  | |||||||||||||||    
T  46209447 tgggctttgacccggtcaaaataggagggggccactgagttgcaaaaggggggtgaagttgggggg 46209512  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 28087748 - 28087799
Alignment:
Q  163 aataggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    |||| ||||||||||||||||||  |||||| ||| ||||||||||||||||    
T  28087748 aatatgaggccaaaattgctacggagtcaaatataaggggccaaaagtgcat 28087799  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 1920991 - 1920942
Alignment:
Q  163 aataggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgc 212  Q
    |||||| ||||||||||| ||||  | |||||||||||||||||||||||    
T  1920991 aatagggggccaaaattgttacgatggcaaacatagggggccaaaagtgc 1920942  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 45782077 - 45782028
Alignment:
Q  165 taggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    |||| ||||||||||||||||  | |||||||||||| ||||||||||||    
T  45782077 tagggggccaaaattgctacggtggcaaacataggggaccaaaagtgcat 45782028  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 655584 - 655533
Alignment:
Q  163 aataggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    |||||| |||||||||||||||   | |||||||||||||||||||||||||    
T  655584 aatagggggccaaaattgctaccatggcaaacatagggggccaaaagtgcat 655533  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 46693101 - 46693042
Alignment:
Q  82 ttgacccgcttaaaatagaagggggtcactgagttgcaaaatgcggtgaagttggggggc 141  Q
    |||||| | ||||||||| ||||||| |||||||||||||  | ||||||||||||||||    
T  46693101 ttgaccgggttaaaataggagggggttactgagttgcaaacaggggtgaagttggggggc 46693042  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 48743179 - 48743137
Alignment:
Q  172 ccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    ||||||||||||||  | |||||||||||||||||||||||||    
T  48743179 ccaaaattgctacgacggcaaacatagggggccaaaagtgcat 48743137  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 2683198 - 2683247
Alignment:
Q  165 taggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    |||| ||||||||||||||||  | |||| ||||||||||||||||||||    
T  2683198 tagggggccaaaattgctacggtggcaaatatagggggccaaaagtgcat 2683247  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 128407 - 128358
Alignment:
Q  165 taggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcat 214  Q
    |||| ||||||||||| ||||  | |||||||||||||||||||||||||    
T  128407 tagggggccaaaattgatacgacggcaaacatagggggccaaaagtgcat 128358  T

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