View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_12 (Length: 504)
Name: NF11809_low_12
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 60 - 504
Target Start/End: Complemental strand, 7501084 - 7500640
Alignment:
| Q |
60 |
tgagaatagctagaatacgtaaataaattaactataaaggagatattaaactgaaaacactaatcaatatcaaagctaatttcctgaatcatagcttgaa |
159 |
Q |
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| T |
7501084 |
tgagaatagctagaatacgtaaataaattaactataaaggagatattaaactgaaaacactaatcaatatcaaagctaatttcctgaatcatagcttgaa |
7500985 |
T |
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| Q |
160 |
aacaatagcttgttcaactcaacaatttctttcaccatattttgtgggttttgtgcctcttgtacnnnnnnnnnnnnnnnnnaaggagtacctcttgtac |
259 |
Q |
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| T |
7500984 |
aacaatagcttgttcaactcaacaatttctttcaccatattttgtgggtttagtgcctcttgtatttattttttatttttttagggagtacctcttgtac |
7500885 |
T |
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| Q |
260 |
tcattctcatctttctattttaataaatattcatttgctgcttaaagaaaactcccttcacccatcatgaataatttcagtaggttagatccagacatca |
359 |
Q |
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| T |
7500884 |
tcattctcatctttctattttaataaatattcatttgctgctaaaagaaaactcccttcacccatcatgaataatttcagtaggttagatccagacatca |
7500785 |
T |
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| Q |
360 |
tccagacctatatccttccacgcctcgatggggcagccttaatggcattgtcctgtgtatgttctgaccttcgccacttgatctgcaacaacgaggaatt |
459 |
Q |
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| T |
7500784 |
tccagacctatatccttccacgcctcgatggggcagccttaatggcattgtcctgtgtatgttccgaccttcgccacttgatctgcaacaacgaggaatt |
7500685 |
T |
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| Q |
460 |
atggcggaacatttgcacctccatgtggccttgccttctgcatcc |
504 |
Q |
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| T |
7500684 |
atggcggaacatttgcacctccatgtggccttgccttctgcatcc |
7500640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 8057200 - 8057240
Alignment:
| Q |
320 |
cccatcatgaataatttcagtaggttagatccagacatcat |
360 |
Q |
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| T |
8057200 |
cccatcatgaataatttcagtaggttatgtccagacatcat |
8057240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 491
Target Start/End: Original strand, 27240723 - 27240882
Alignment:
| Q |
335 |
ttcagtaggttagatccagacatcatccagacctatatccttccacgcctcgatggggcagccttaatggcattgtcctgtgtatgttctgaccttcgcc |
434 |
Q |
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| T |
27240723 |
ttcagtaggttagatccagacatcatgcatacccacatccttccccgcctcgacggcacaaccttaatcgtcttattctctgtatgttcagaactccgtc |
27240822 |
T |
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| Q |
435 |
acttgatctg---caacaacgaggaattatggcggaacatttgcacctccatgtggcctt |
491 |
Q |
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| T |
27240823 |
acatgatttgccacaacaacgaagatctatggcggaacatatgcacctcaaagtggcctt |
27240882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 477
Target Start/End: Original strand, 27253110 - 27253177
Alignment:
| Q |
410 |
tcctgtgtatgttctgaccttcgccacttgatctgcaacaacgaggaattatggcggaacatttgcac |
477 |
Q |
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| T |
27253110 |
tcctgtgtatcttcagaactccgccacatgatctgcaacaacgaagatctatggcggaacatatgcac |
27253177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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