View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11809_low_13 (Length: 498)
Name: NF11809_low_13
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 482
Target Start/End: Original strand, 51755925 - 51756402
Alignment:
| Q |
11 |
caaagggaaagatgaagtttaccttgtattattatgac------gatgaagatgacattgacagagaatgcaaggaaagtgttgagacgttnnnnnnnnt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
51755925 |
caaagggaaagatgaagtttaccttgtattattatgaccatgaagatgaagatgacattgacagagaatgcaaggagagtgttgagacgttaaaaaaaat |
51756024 |
T |
|
| Q |
105 |
aacggaggaattatgggaagagaaagaaggaagattagggtggtgggagagttgggaaaacttgttgaggacaagaactggagagaacgaaggtgggtgg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51756025 |
aacggaggaattatgggaagagaaagaaggaagattagggtggtgggagagttgggaaaacttgttgaggacaagaactggagagaacgaaggtgggtgg |
51756124 |
T |
|
| Q |
205 |
tatacatgccaagatttaacggtgattaatggcaacgttgttaggttttgggatgaagatttcgagtttgcttcctttgcaaatggaggaatcaaataac |
304 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51756125 |
tatacatgccaagatttaacggtgattaacggcaacgttgttaggttttgggatgaagagttcgagtttgcttcctttgcaaatggaggaatcaaataac |
51756224 |
T |
|
| Q |
305 |
agcttcagttgtatgttcttgtatggtagtaatcactaattagattagatagagaaacataagtatgttataataatattgctatcatcaatgtatatat |
404 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
51756225 |
agcttcagctgtatgttcttgtatggtagtaatcactaattagattagatagagaaacataagtatgttataataatattgttatcatcaatgtatatat |
51756324 |
T |
|
| Q |
405 |
ggtggtgggttaattaatttggataacatatatcatgataagttgatatataatcctctcctcattcatgctctttgg |
482 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51756325 |
ggtggtgggttaattaatttggataatatatatcatgataagttgatatataatcatctcctcattcatgctctttgg |
51756402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University