View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_16 (Length: 467)
Name: NF11809_low_16
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 7760967 - 7761401
Alignment:
| Q |
19 |
catcgagctatgaggcaacttgaagtcaaccattctgtatggataaaaatctggcgggaaattcttcgatgggtaccacttccaatcaagtagccgtaaa |
118 |
Q |
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| T |
7760967 |
catcgagctatgaggcaacttgaagtcaaccattctgtatggataaaaatctggcgggaaattcttcgatgggtaccacttccaatcaagtagccgtaaa |
7761066 |
T |
|
| Q |
119 |
ctattcggcaagtaactaggtccaaatgaaaacaatgtattccttacaatcaaaattctgaggtttttcatcttttgaaaggcattataagcccaatgat |
218 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7761067 |
ctattcggcaaataactaggtccaaatgaaaacaatgtattccttacaatcaaaattctgaggtttttcatcttttgaaaggcattataggcccaatgat |
7761166 |
T |
|
| Q |
219 |
ctactttctcttgttttgggggatgaagcattattccttcaactgtggtacttccctatacataatacatgaaaaatgtagatagtttgagactaaaata |
318 |
Q |
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| T |
7761167 |
ctactttctcttgttttgggggatgaagcattattccttcaactgtggtacttccctatacataatacatgaaaaatgtagatagtttgagactaaaata |
7761266 |
T |
|
| Q |
319 |
tatttgccaaagttnnnnnnnnngaaggtatattaacaaagtaaaaatgatataattctcactaagtttcctttcagtacaccgagaacatcgtgatgag |
418 |
Q |
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| T |
7761267 |
tatttgccaaagttaaaaaaaagaaaggtatattaacaaagtaaaaatgatataattctcactaagtttcctttcagtacaccgagaacatcgtgatgag |
7761366 |
T |
|
| Q |
419 |
accataatctgctgcgttcaccagggtttgatgtc |
453 |
Q |
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| T |
7761367 |
accataatctgctgcgttcaccagggtttgatgtc |
7761401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 23 - 332
Target Start/End: Original strand, 7837400 - 7837706
Alignment:
| Q |
23 |
gagctatgaggcaacttgaagtcaaccattctgtatggataaaaatctggcgggaaattcttcgatgggtaccacttccaatcaagtagccgtaaactat |
122 |
Q |
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||||||||||| |||||||||||||| ||| ||||||||||||||| ||||||||||| ||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
7837400 |
gagctatgaggtaacttgaagtcaacgattttgtatggataaaaatttggcgggaaatcctttgatgggtagcacttccaatcgagtagccgtaaactat |
7837499 |
T |
|
| Q |
123 |
tcggcaagtaactaggtccaaatgaaaacaatgtattccttacaatcaaaattctgaggtttttcatcttttgaaaggcattataagcccaatgatctac |
222 |
Q |
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||||||| ||||||||||| ||||||| | ||||||||| ||||||||||||||||| ||||||||||| | ||||||| || ||||||||||||| |
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| T |
7837500 |
tcggcaaataactaggtcctgatgaaaatactgtattcctaacaatcaaaattctgagatttttcatcttcttaaaggcagcatcgtcccaatgatctac |
7837599 |
T |
|
| Q |
223 |
tttctcttgttttgggggatgaagcattattccttcaactgtggtacttccctatacataatacatgaaaaatgtagatagtttgagactaaaatatatt |
322 |
Q |
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||| |||||||||||||||||||||||||| |||||||||| |||||||||||| | ||||||||||||||| ||| | |||||||||||| ||||| |
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| T |
7837600 |
tttttcttgttttgggggatgaagcattatgccttcaactgcagtacttccctattga-aatacatgaaaaatggagaga-attgagactaaaa-atatt |
7837696 |
T |
|
| Q |
323 |
tgccaaagtt |
332 |
Q |
| |
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|||||||||| |
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| T |
7837697 |
tgccaaagtt |
7837706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 26 - 295
Target Start/End: Original strand, 7753855 - 7754125
Alignment:
| Q |
26 |
ctatgaggcaacttgaagtcaaccattctgtatggataaaaatctggcgggaaattcttcgatgggtaccacttccaatcaagtagccgtaaactattcg |
125 |
Q |
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|||||||| |||||||| ||||| ||||||||||||||||||| | | ||||||| ||| || ||||| ||||||||||| |||||||||||| |||| | |
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| T |
7753855 |
ctatgaggtaacttgaaatcaacaattctgtatggataaaaatttagtgggaaatcctttgaagggtagcacttccaatcgagtagccgtaaattatttg |
7753954 |
T |
|
| Q |
126 |
gcaagtaactaggtccaaatgaaaacaatgtattccttacaatcaaaattctgaggtttttc-atcttttgaaaggcattataagcccaatgatctactt |
224 |
Q |
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|||| || |||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||| |||||||| |
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| T |
7753955 |
gcaaatagctaggtcctgatgaaaataatgtattccttacaatcaaaattctgaggtttttctatcttcttaaaggcagaataagcccaataatctactt |
7754054 |
T |
|
| Q |
225 |
tctcttgttttgggggatgaagcattattccttcaactgtggtacttccctatacataatacatgaaaaat |
295 |
Q |
| |
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| ||||||||||||||||||||||| |||||||| ||| | ||||||||||| | | |||||||||||||| |
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| T |
7754055 |
tttcttgttttgggggatgaagcatcattccttctactttagtacttccctaaagaaaatacatgaaaaat |
7754125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 343 - 452
Target Start/End: Original strand, 7754192 - 7754301
Alignment:
| Q |
343 |
aaggtatattaacaaagtaaaaatgatataattctcactaagtttcctttcagtacaccgagaacatcgtgatgagaccataatctgctgcgttcaccag |
442 |
Q |
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||||| |||||| |||||||| ||||||||||||| || || ||||||||||||||| | |||||||| | ||||||||| |||||||| |||||||||| |
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| T |
7754192 |
aaggtctattaagaaagtaaagatgatataattcttaccaaatttcctttcagtacatcaagaacatctttatgagaccacaatctgctacgttcaccag |
7754291 |
T |
|
| Q |
443 |
ggtttgatgt |
452 |
Q |
| |
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|||||||||| |
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| T |
7754292 |
ggtttgatgt |
7754301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 373 - 449
Target Start/End: Original strand, 7837738 - 7837814
Alignment:
| Q |
373 |
attctcactaagtttcctttcagtacaccgagaacatcgtgatgagaccataatctgctgcgttcaccagggtttga |
449 |
Q |
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| T |
7837738 |
attcttaccaagtttcctttcagcacatcaagagcatctttatgagaccataacctgctgcgttcaccagggtttga |
7837814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 7829433 - 7829317
Alignment:
| Q |
25 |
gctatgaggcaacttgaagtcaaccattctgtatggataaaaatctggcgggaaattcttcgatgggtaccacttccaatcaagtagccgtaaactattc |
124 |
Q |
| |
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|||||||| || |||| |||||| ||||||| ||||||||||| || || || ||| ||||| ||| | |||| ||||||||||||||||||||| |
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| T |
7829433 |
gctatgagataagttgatgtcaacaattctgtcgggataaaaatcaggtggaaagaactttaatgggaaccccatccagtcaagtagccgtaaactattc |
7829334 |
T |
|
| Q |
125 |
ggcaagtaactaggtcc |
141 |
Q |
| |
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|| || |||||||||| |
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| T |
7829333 |
ggtaaacaactaggtcc |
7829317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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