View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_18 (Length: 454)
Name: NF11809_low_18
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 1270383 - 1270589
Alignment:
| Q |
19 |
ctatgaagtgttacaacatggtaaagttactgatttgaagtgcctttgtcttgatgcaggggcagggatgaatagcatgcttgagcagggttcagtggtg |
118 |
Q |
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| T |
1270383 |
ctatgaagtgttacaacatggtaaagttactgatttgaagtgcctttgtcttgatgcaggggcagggatgaatagcattcttgagcagggttcagtggtg |
1270482 |
T |
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| Q |
119 |
ggcaaagaacctgatgaacaaaccaaagaaattttccgtccatatcgtgtcttttgtgcgcgaaaagatgtaagtttcacnnnnnnnccaggatagaaaa |
218 |
Q |
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| T |
1270483 |
ggcaaagaacctgatgaacaaaccaaagaaattttccgtccatatcgtgtcttttgtgcgcgaaaagatgtaagtttcacttttttcccaggatagaaaa |
1270582 |
T |
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| Q |
219 |
caagagg |
225 |
Q |
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| T |
1270583 |
caagagg |
1270589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 309 - 450
Target Start/End: Original strand, 1270673 - 1270814
Alignment:
| Q |
309 |
gataggtacactgcaaggacgttgtagtagaacatggagatgtatccaaagctttaattgaatatacttctcaatcagcaattgagcatttggttctagg |
408 |
Q |
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| T |
1270673 |
gataggtacactgcaaggacgttgtagtagaacatggagatgtatgcaaagctttaattgaatatacttctcaatcagcaattgagcatttggttctagg |
1270772 |
T |
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| Q |
409 |
ctgttccaacaaaaatggttttctcaagtattcttctctctc |
450 |
Q |
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| T |
1270773 |
ctgttccaacaaaaatggttttctcaagtattcttctatctc |
1270814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 1257459 - 1257524
Alignment:
| Q |
99 |
ttgagcagggttcagtggtgggcaaagaacctgatgaacaaaccaaagaaattttccgtccatatc |
164 |
Q |
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| T |
1257459 |
ttgaggagggttcactggtgtgcaaaaagcctaatgaacaaaccaaagaaatgtttcgtctatatc |
1257524 |
T |
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