View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_21 (Length: 452)
Name: NF11809_low_21
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 5973072 - 5972641
Alignment:
| Q |
1 |
gtgtgtgaagtaaatggtaatgagtaatgagggaagatgaaaatggaaagatagtttaagggttgtgattaaataagataaagtggtcgttgttgtgtgt |
100 |
Q |
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| T |
5973072 |
gtgtgtgaagtaaatggtaatgagtaatgagggaagatgaaaatggaaagatatgttaagggttgtgattaaataagataaagtggtcgttgttgtgtgt |
5972973 |
T |
|
| Q |
101 |
agggtaggtttgggttttgggtttctttgtta-----tatttcaattcaattaatgcaaagttaggaattatttttgggaaaaatgtaaagatctttgtt |
195 |
Q |
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| T |
5972972 |
agggtaggtttggtttttgggtttctttgttatggagtatttcaattcaattaatgcaaagttaggaattttttttgggaaaaatgtaaaaatctttgtt |
5972873 |
T |
|
| Q |
196 |
ttgagtttgaagaatgtgatgtgatgatgcgtgggaggaacgagtaaggggagtgtt----nnnnnnnnnnnnagagcgggattgatggaaaacggtgat |
291 |
Q |
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| T |
5972872 |
ttgagtttgaagaatgtgatgtgatgatgcgtgggaggaacgagtaaggggagtgtttgtgtgtgtgtgtgtgagagcgggattgatggaaaacggtgat |
5972773 |
T |
|
| Q |
292 |
gtagaggagagggaaagtgaggagagagaaatagctgttggaaaaggacaaaacttttcccatgttataagaaacactacacatgacaaatatgccccta |
391 |
Q |
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| T |
5972772 |
gca---------------gaggaaagagaaatagctgttggaaaaggacaaaacttttcccatgttataagaaacactacacatgacaaatatgccccta |
5972688 |
T |
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| Q |
392 |
atctaacttttagtacccttattacccccttattaaatacatgatgt |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5972687 |
atctaacttttagtacccttattacccccttattaaatacattatgt |
5972641 |
T |
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