View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_23 (Length: 450)
Name: NF11809_low_23
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 34382857 - 34383296
Alignment:
| Q |
1 |
cattaggaagataaatcttgcacaatagataagattgtttctgttcaataaatctcatcattaaattaaatgaaacatgatttgataatcacttgataat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34382857 |
cattaggaagataaatcttgcacaatagataagattgtttctgttcaataaatctcatcattaaattaaatgaaacatgatttgataatcacttgataat |
34382956 |
T |
|
| Q |
101 |
caagtcgaacaatgtttcagtaaactcattattttttaataatatgctaggagatctagtgtaaatcatattaaatttttggtacagtggcatgctaaat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34382957 |
caagtcgaacaatgtttcagtaaactcattattttttaataatatgctaggagatctagtgtaaatcatattaaatttttggtacagtggcatgctaaat |
34383056 |
T |
|
| Q |
201 |
gtgtgagaaagttgacaatttgaaaaattgtagacagaacaattgaaagtaagtctgtttttaatttaaatacaaaatggcttagtcttggctcccatgt |
300 |
Q |
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| T |
34383057 |
gtgtgagaaagttgacaatttgaaaaattgtagacagaacaattgaaagtaagtctgtttttaatttaaatacaaaatggcttagtcttggctcccatgt |
34383156 |
T |
|
| Q |
301 |
gcactgaaacgtactatttatgaactaacaagttggtagcatcccaatatactatgcatgtgagggagaaaatattaaggattgagaaatggagggagta |
400 |
Q |
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| T |
34383157 |
gcactgaaacgtactatttatgaactaacaatttggtagcatcccaatatactatgcatgtgagggagaaaatattaaggattgagaaatggagggagta |
34383256 |
T |
|
| Q |
401 |
ctgatttttattacctagtttagtgaaactttggtctctg |
440 |
Q |
| |
|
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|
| T |
34383257 |
ctgatttttattatctagtttagtgaaactttggtctctg |
34383296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 77 - 229
Target Start/End: Original strand, 34368306 - 34368464
Alignment:
| Q |
77 |
atgatttgataatcacttgataa-----tcaagtcgaacaatgtttcagtaaactcattatttt-ttaataatatgctaggagatctagtgtaaatcata |
170 |
Q |
| |
|
||||||||||||||||||||| | |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
34368306 |
atgatttgataatcacttgatgactagttcaaatcgaacagtgtttcagtaaactcattatttttttaataatatgctaggacatctagtgtaaatcata |
34368405 |
T |
|
| Q |
171 |
ttaaatttttggtacagtggcatgctaaatgtgtgagaaagttgacaatttgaaaaatt |
229 |
Q |
| |
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|||| ||||||||||||||||| ||| |||||||||| || ||| ||||||| |||||| |
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|
| T |
34368406 |
ttaattttttggtacagtggcacgctcaatgtgtgagcaatttggcaatttgcaaaatt |
34368464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 34366758 - 34366812
Alignment:
| Q |
11 |
ataaatcttgcacaatagataagattgtttctgttcaataaatctcatcattaaa |
65 |
Q |
| |
|
||||||||| ||| ||| |||| |||||||| ||||||||||||||||||||||| |
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|
| T |
34366758 |
ataaatcttacactatatataacattgtttcagttcaataaatctcatcattaaa |
34366812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 45806931 - 45806890
Alignment:
| Q |
45 |
tcaataaatctcatcattaaattaaatgaaacatgatttgat |
86 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
45806931 |
tcaataaatctcatcattaaattaaataaaacatgatgtgat |
45806890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 75
Target Start/End: Original strand, 19513998 - 19514028
Alignment:
| Q |
45 |
tcaataaatctcatcattaaattaaatgaaa |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
19513998 |
tcaataaatctcatcattaaattaaatgaaa |
19514028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 6863087 - 6863123
Alignment:
| Q |
45 |
tcaataaatctcatcattaaattaaatgaaacatgat |
81 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
6863087 |
tcaataaatctcaccattaaattaaatgaaatatgat |
6863123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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