View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_25 (Length: 435)
Name: NF11809_low_25
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Original strand, 48474316 - 48474721
Alignment:
| Q |
17 |
taacttaagccatctagatactgatacatatcctaaacttctgatagtgtgatttacaagcaatggttctctaagttgattcatgatgatatctgaagaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48474316 |
taacttaagccatctagatactgatacatatcctaaacttctgatagtgtgatttacaagcaatggttctctaagttgattcatgatgatatctgaagaa |
48474415 |
T |
|
| Q |
117 |
gagaatgagatgggaagggagagttgcggcaaactgggcatgtagcgttcatgcgaagccattcatcaatgcagtgagcatgaaaacagtgtttgcattc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48474416 |
gagaatgagatgggaagggagagttgcggcaaactgggcatgtagcgttcatgcgaagccattcatcaatgcagtgagcatgaaaacagtgtttgcattc |
48474515 |
T |
|
| Q |
217 |
aggaatgcatctaattatgtccttactgttgtactctgagaggcatattgagcaacatccggttccatcattgtgtcccactcccggcagccttcggctc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48474516 |
aggaatgcatctaattatgtccttactgttgtactctgagaggcatattgagcaacatccggttccatcgttgtgtcccactcccggcagccttcggctc |
48474615 |
T |
|
| Q |
317 |
tctcctaacacagccttcccaaaagactcaattgttgactcatccagacccatcctcatccttgtaatggtaatgtcaatggaaggttcagctgatatcg |
416 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48474616 |
tctcctaacacaaccttcccaaaagactcaattgttgactcatccagacccatcctcatccttgtaatggtaatgtcaatggaaggttcagctgatatcg |
48474715 |
T |
|
| Q |
417 |
tccttc |
422 |
Q |
| |
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|||||| |
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| T |
48474716 |
tccttc |
48474721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 365
Target Start/End: Original strand, 48472115 - 48472224
Alignment:
| Q |
248 |
tactctgagaggcatattgagcaacatccggttccatcattgtgtcccactcccggcagccttcggctctctcctaacacagccttcccaaaagactcaa |
347 |
Q |
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||||||||||||||| ||| |||||| |||||||||||||||| | |||| || || |||||||||||| ||| ||| ||||||| |||| |
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| T |
48472115 |
tactctgagaggcatgttgggcaacacccggttccatcattgttttccacctcctgc--------gctctctcctaatacaatcttgtcaaaagattcaa |
48472206 |
T |
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| Q |
348 |
ttgttgactcatccagac |
365 |
Q |
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|||||||||||||||||| |
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| T |
48472207 |
ttgttgactcatccagac |
48472224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 134 - 254
Target Start/End: Complemental strand, 10058024 - 10057904
Alignment:
| Q |
134 |
ggagagttgcggcaaactgggcatgtagcgttcatgcgaagccattcatcaatgcagtgagcatgaaaacagtgtttgcattcaggaatgcatctaatta |
233 |
Q |
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|||||||| || ||||| ||||||||| | ||||| |||||||| |||||||| || | |||||| ||||| ||||||||||||||||||||||| | | |
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| T |
10058024 |
ggagagttacgacaaacagggcatgtaacattcatacgaagccactcatcaatacaatcagcatggaaacaatgtttgcattcaggaatgcatcttactg |
10057925 |
T |
|
| Q |
234 |
tgtccttactgttgtactctg |
254 |
Q |
| |
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| || ||||||||||| |||| |
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|
| T |
10057924 |
tctctttactgttgtattctg |
10057904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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