View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_27 (Length: 404)
Name: NF11809_low_27
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 28 - 382
Target Start/End: Original strand, 5663024 - 5663378
Alignment:
| Q |
28 |
atccgtgttcaataaaacgaaagaacacggttgaatgattattcaatacaattgcatccaggtaattgtattagcaagattgaattcattgttgacggtg |
127 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
5663024 |
atccgtgttcaataaaacggaaaaacacggttgaatgattattctatacaagtgcatccaggtaattgtattagcaagattgaattcattgtttatggtg |
5663123 |
T |
|
| Q |
128 |
tatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagtagttaaag--acattagcttcacgttctcctccatttcct |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |
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| T |
5663124 |
tatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaagacacattagcttcacattctcctccatttcct |
5663223 |
T |
|
| Q |
226 |
gtca-atttggtactcacgagccagtagttatgttctgctgccttgggttataacttcttcatcttcctcctgttattatactactgttgttataatagt |
324 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
5663224 |
gtcagttttggtactcacgagccagtagttatgttctgctgccttggtttataacttcttcatct---ttctgttattatactactgttgttataatagt |
5663320 |
T |
|
| Q |
325 |
tttcttctatgctgatattgctaacatgttactataaactgcttatgagaatcatgtg |
382 |
Q |
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| T |
5663321 |
tttcttctgtgctgatattgctaacatgttactataatctgcttatgagaatcatgtg |
5663378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 52131255 - 52131504
Alignment:
| Q |
19 |
aatacgcccatccgtgttcaataaaacgaaagaacacggttgaatgattattcaatacaattgcatccaggtaattgtattagcaagattgaattcattg |
118 |
Q |
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| T |
52131255 |
aatacgcccatccgtgttcagtaaaacgaa-gaacacggttgaatgattattcaatacaagtgcatccaggtaattgtattagcaagattgaatttatta |
52131353 |
T |
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| Q |
119 |
ttgacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagtagttaaaga-cat-tagcttcacgttctcct |
216 |
Q |
| |
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||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| ||| |||| ||||||| |||| |
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| T |
52131354 |
ttgacggtgtatctcaatccgatttcgaagcttctgtcatcggtaagaccatggtcgcttctcacaagaagtcaaagaacatgtagcgtcacgttatcct |
52131453 |
T |
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| Q |
217 |
ccatttcctgtcaatttggtactcacgagccagtagttatgttctgctgccttgg |
271 |
Q |
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| T |
52131454 |
ccatttcctgtcaatttggtactcacgaga----agttatgttctgctgccttgg |
52131504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 11649319 - 11649155
Alignment:
| Q |
19 |
aatacgcccatccgtgttcaataaaacgaaagaacacggttgaatgattattcaatacaattgcatccaggtaattgtattagcaagattgaattcattg |
118 |
Q |
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|||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11649319 |
aatacgcccatccgtgttcactaaaaaggaagaacacggttgaatgattattcaatacaagtgcatccaggtaattgtattagcaagattgaattcattg |
11649220 |
T |
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| Q |
119 |
ttgacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcac |
183 |
Q |
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| T |
11649219 |
ttgacggtgtatctcgctccgacttcgaagcttctgtcatcggtaagaccatggtcgcttctcac |
11649155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 22007660 - 22007884
Alignment:
| Q |
20 |
atacgcccatccgtgttcaataaaacgaaagaacacggttgaatgattattcaatacaattgcatccaggtaattgtattagcaagattgaattcattgt |
119 |
Q |
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|||||||| || ||||||| ||||| | |||||||| ||||||||||||||||||||| ||||||||| ||| ||||||| |||| |||||||||||| |
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| T |
22007660 |
atacgcccctctgtgttcagtaaaaaggaagaacactgttgaatgattattcaatacaggtgcatccagataagtgtattacgaagactgaattcattgt |
22007759 |
T |
|
| Q |
120 |
tgacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagtagttaaag-acat-tagcttcacg----ttct |
213 |
Q |
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|| |||||||||||||| ||||||| || ||||||||| || |||||||||||||||| ||||||| |||||||| |||| |||||||||| |||| |
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| T |
22007760 |
tggcggtgtatctcgcttcgacttcaaaacttctgtcatcgtcaagaccatggtcgcttttcacaagaagttaaagaacatgtagcttcacgttgattct |
22007859 |
T |
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| Q |
214 |
cctccatttcctgtcaatttggtac |
238 |
Q |
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||||||||||||||||||||||||| |
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| T |
22007860 |
cctccatttcctgtcaatttggtac |
22007884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 11649159 - 11649126
Alignment:
| Q |
238 |
ctcacgagccagtagttatgttctgctgccttgg |
271 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| |
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| T |
11649159 |
ctcacgagccagcagttatgttctgctgccttgg |
11649126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 14231210 - 14231304
Alignment:
| Q |
35 |
ttcaataaaacgaaagaacacggttgaatgattattcaatacaattgcatccaggtaattgtattagcaagattgaattcattgttgacggtgtatc |
131 |
Q |
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|||| ||||| | |||||||||||||||||| |||||||||| ||||||||| |||| |||||| |||| | ||| ||||||| ||||||||| |
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| T |
14231210 |
ttcagtaaaaaggaagaacacggttgaatga--attcaatacaggtgcatccagataataatattaggaagactagatttattgttggcggtgtatc |
14231304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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