View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11809_low_28 (Length: 402)

Name: NF11809_low_28
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11809_low_28
NF11809_low_28
[»] chr4 (5 HSPs)
chr4 (20-388)||(42684244-42684630)
chr4 (31-170)||(27119071-27119210)
chr4 (31-170)||(21185473-21185612)
chr4 (241-319)||(27119210-27119288)
chr4 (241-319)||(21185612-21185690)
[»] chr8 (1 HSPs)
chr8 (338-376)||(2482742-2482780)
[»] chr3 (1 HSPs)
chr3 (338-379)||(37138242-37138283)
[»] chr1 (1 HSPs)
chr1 (338-379)||(4920899-4920940)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 42684244 - 42684630
Alignment:
Q  20 cgtttggcgccttggcctccgcaatcgctcttcatttcttctaccgctctcaaactcactcatccaaaaccaatccttcacaaaacggcatcgtatctt- 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42684244 cgtttggcgccttggcctccgcaatcgctcttcatttcttctaccgctctcaaactcactcatccaaaaccaatccttcacaaaacggcatcgtatcttc 42684343  T
Q  119 -----------------cttcacgagttagaagttctggggatccttttgaccccaccaagcgcaaagggtaattccatttctaacttcttttatttact 201  Q
                     ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42684344 ttcttcttcttcttcttcttcacgagttagaagttctggggatcctttcgaccccaccaagcgcaaagggtaattccatttccaacttcttttatttact 42684443  T
Q  202 ttgtagctcgtatttatttaacggatttgattttatgcagatacttgtcttgggatgattatttcatggctattgcgtttttgtctgctgaaagatccaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42684444 ttgtagctcgtatttatttaacggatttgattttatgcagatacttgtcttgggatgattatttcatggctattgcgtttttgtctgctgaaagatccaa 42684543  T
Q  302 agaccctaataggcaggtcatattttattgcaaaattgtttggataaacagctcaattggaagcttatagcataagtgtataaacta 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42684544 agaccctaataggcaggtcatattttattgcaaaattgtttggataaacagctcaattggaagcttatagcataagtgtataaacta 42684630  T

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Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 27119071 - 27119210
Alignment:
Q  31 ttggcctccgcaatcgctcttcatttcttctaccgctctcaaactcactcatccaaaaccaatccttcacaaaacggcatcgtatcttcttcacgagtta 130  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | |||||||||| || ||||    
T  27119071 ttggcctctgcaatcgctctccatttcttctaccgctctcaaactcactcatccaaaaccaatccctcgcaaaacggcaccatatcttcttctcgcgtta 27119170  T
Q  131 gaagttctggggatccttttgaccccaccaagcgcaaagg 170  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  27119171 gaagttctggggacccttttgaccccaccaagcgcaaagg 27119210  T

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Target: chr4; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 21185473 - 21185612
Alignment:
Q  31 ttggcctccgcaatcgctcttcatttcttctaccgctctcaaactcactcatccaaaaccaatccttcacaaaacggcatcgtatcttcttcacgagtta 130  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||  | || |||||||||| | |||||||||| || ||||    
T  21185473 ttggcctctgcaatcgctctccatttcttctaccgctctcaaactcactcatccaaaaccaaaacctcgcaaaacggcaccatatcttcttctcgcgtta 21185572  T
Q  131 gaagttctggggatccttttgaccccaccaagcgcaaagg 170  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  21185573 gaagttctggggacccttttgaccccaccaagcgcaaagg 21185612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 241 - 319
Target Start/End: Original strand, 27119210 - 27119288
Alignment:
Q  241 gatacttgtcttgggatgattatttcatggctattgcgtttttgtctgctgaaagatccaaagaccctaataggcaggt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27119210 gatacttgtcttgggatgattatttcatggctattgcgtttttgtctgctgaaagatccaaagaccctaataggcaggt 27119288  T

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Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 241 - 319
Target Start/End: Original strand, 21185612 - 21185690
Alignment:
Q  241 gatacttgtcttgggatgattatttcatggctattgcgtttttgtctgctgaaagatccaaagaccctaataggcaggt 319  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21185612 gatacttgtcttgggatgattatttcatggctattacgtttttgtctgctgaaagatccaaagaccctaataggcaggt 21185690  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 2482742 - 2482780
Alignment:
Q  338 tgtttggataaacagctcaattggaagcttatagcataa 376  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  2482742 tgtttggataaacagcttaatttgaagcttatagcataa 2482780  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 37138242 - 37138283
Alignment:
Q  338 tgtttggataaacagctcaattggaagcttatagcataagtg 379  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  37138242 tgtttggataaacaacttaatttgaagcttatagcataagtg 37138283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 4920940 - 4920899
Alignment:
Q  338 tgtttggataaacagctcaattggaagcttatagcataagtg 379  Q
    ||||||||||||||||| |||| | |||||||||||||||||    
T  4920940 tgtttggataaacagcttaatttgcagcttatagcataagtg 4920899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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