View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11809_low_29 (Length: 401)
Name: NF11809_low_29
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 36451171 - 36451543
Alignment:
| Q |
18 |
ctaatatcattgtatttgttcctatataaggagaaagtttaggtagatttttaattgtaagattttgatctacaacaaaagagataaagagagtttaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36451171 |
ctaatatcattgtatttgttcctatataaggagaaagtttaggtagatttttaattgtaagattttgatctacaacaaaagagataaagagagtttaaga |
36451270 |
T |
|
| Q |
118 |
agtgatatgggagagtatggttatgcataccgtagcatctcgacttacagtaccataagaaatggaacacgtgagcctgctgttataaaaccatttgttc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36451271 |
agtgatatgggagagtatggttatgcataccgtagcatctcgacttacagtaccataagaaatggaatacgtgagcctgctgttataaaaccatttgttc |
36451370 |
T |
|
| Q |
218 |
ctttcaatcccaaaagtaataatggtagtaattactcagacggtgctgttaacaggnnnnnnnttgtaccagttactggcaggccttatgatgagcctgc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36451371 |
ctttcaatcccaaaagtaataatggtagtaattactcagagggtgctgttaacagtaaaaaaattgtaccagttactggcaggccttatgatgagcctgc |
36451470 |
T |
|
| Q |
318 |
aacagagaaatatccctcttcagaggatgaatctgatgatgatgaaaggcgtcgtcaattaagccctgttcat |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36451471 |
aacagagaaatatccctcttcagaggatgaatttgatgatgatgaaaggcgtcgtcaattaagccctgttcat |
36451543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University