View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11809_low_32 (Length: 387)

Name: NF11809_low_32
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11809_low_32
NF11809_low_32
[»] chr4 (2 HSPs)
chr4 (5-372)||(42684885-42685252)
chr4 (85-114)||(8689343-8689372)
[»] chr6 (1 HSPs)
chr6 (78-147)||(20848611-20848680)
[»] chr8 (1 HSPs)
chr8 (94-163)||(33503697-33503768)
[»] chr1 (4 HSPs)
chr1 (78-161)||(34688645-34688728)
chr1 (78-161)||(34693173-34693256)
chr1 (93-131)||(8281522-8281560)
chr1 (51-148)||(19933374-19933470)
[»] chr7 (1 HSPs)
chr7 (90-152)||(24416812-24416874)
[»] chr3 (1 HSPs)
chr3 (59-163)||(10274553-10274657)
[»] chr2 (2 HSPs)
chr2 (94-170)||(37527034-37527111)
chr2 (63-150)||(11292413-11292501)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 5 - 372
Target Start/End: Original strand, 42684885 - 42685252
Alignment:
Q  5 tgttattcaatgtgtgactcctacaaaggctatggttttgagtgtcgagagctcttgggtgaggttctagggtttgagaaaaacattttaaacaccttgg 104  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42684885 tgttatccaatgtgtgactcctacaaaggctagggttttgagtgtcgagagctcttgggtgaggttctagggtttgagaaaaacatttcaaacaccttgg 42684984  T
Q  105 atagtgagatctcatcagaggaagaatttaagctttctctcttgattttcttaggatcttgttgtggactaagatagacttgagaaaagggtggaaatta 204  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42684985 atagtgagatctcattagaggaagaatttaagctttctctcttgattttcttaggatcttgttgtggactaagatagacttgagaaaagggtggaaatta 42685084  T
Q  205 tggtttatcgttgaagttaattacttgtagcctctttacatcccctgtaaggactcactcgtagtggtttggagagctattctccccgcagacgaaggtc 304  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42685085 tggtttatcgttgaagttaattacttgtaacctctttacattccctgtaaggactcactcgtagtggtttggagagctattctccccgcagacgaaggtc 42685184  T
Q  305 agtttaagccaaactgggaaataatagtattatattagtgtttttgttcctctactctcttatctctg 372  Q
    | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42685185 aatttaaggcaaactgggaaataatagtattatattagtgtttttgttcctctactctcttatctctg 42685252  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 8689343 - 8689372
Alignment:
Q  85 aaacattttaaacaccttggatagtgagat 114  Q
    ||||||||||||||||||||||||||||||    
T  8689343 aaacattttaaacaccttggatagtgagat 8689372  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 20848680 - 20848611
Alignment:
Q  78 ttgagaaaaacattttaaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctctt 147  Q
    |||||||  ||||| ||||||||||||||| | |||| |||| ||||||||||| |||||||||||||||    
T  20848680 ttgagaatcacattctaaacaccttggataataagatttcattagaggaagaatgtaagctttctctctt 20848611  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 33503697 - 33503768
Alignment:
Q  94 aaacaccttggatagtgagatctcatcagaggaagaat--ttaagctttctctcttgattttcttaggatct 163  Q
    ||||||||||| |||||||||||||| |||||||||||    ||| |||||||||||||| |||||||||||    
T  33503697 aaacaccttgggtagtgagatctcattagaggaagaataaaaaagttttctctcttgattctcttaggatct 33503768  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 34688645 - 34688728
Alignment:
Q  78 ttgagaaaaacattttaaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctcttgattt-tcttaggat 161  Q
    |||||||| ||||| |||||||||||| |||||||||| ||| | | |||| || |||||||||||||||||||| |||||||||    
T  34688645 ttgagaaacacattctaaacaccttgggtagtgagatcccattaaatgaag-atctaagctttctctcttgatttctcttaggat 34688728  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 34693173 - 34693256
Alignment:
Q  78 ttgagaaaaacattttaaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctcttgattt-tcttaggat 161  Q
    |||||||| ||||| |||||||||||| |||||||||| ||| | | |||| || |||||||||||||||||||| |||||||||    
T  34693173 ttgagaaacacattctaaacaccttgggtagtgagatcccattaaatgaag-atctaagctttctctcttgatttctcttaggat 34693256  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 8281560 - 8281522
Alignment:
Q  93 taaacaccttggatagtgagatctcatcagaggaagaat 131  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  8281560 taaacaccttgggtagtgagatctcattagaggaagaat 8281522  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 19933374 - 19933470
Alignment:
Q  51 gagagctcttgggtgaggttctagggtttgagaaaaacattttaaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctcttg 148  Q
    ||||||| |||||||||   |||||||| | |||| ||| | |||||||||||| ||| ||||| |||| |||||||  ||| |||||||||||||||    
T  19933374 gagagctattgggtgagaagctagggttgg-gaaatacactctaaacaccttgggtagagagatttcattagaggaatgattgaagctttctctcttg 19933470  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 24416874 - 24416812
Alignment:
Q  90 ttttaaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctcttgattt 152  Q
    ||||||||| |||| ||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  24416874 ttttaaacatcttgtatagtgagatctcattagagaaaggatttaagttttctcttttgattt 24416812  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 163
Target Start/End: Complemental strand, 10274657 - 10274553
Alignment:
Q  59 ttgggtgaggttctagggtttgagaaaaacattttaaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctcttgattt-tctta 157  Q
    ||||||||| |||| ||||| | |||| ||||| ||  |||||||| |||||||||||||| ||||||||    |||| ||||||||||||||| |||||    
T  10274657 ttgggtgagattcttgggttgg-gaaacacattatattcaccttgggtagtgagatctcattagaggaagggcctaagttttctctcttgatttctctta 10274559  T
Q  158 ggatct 163  Q
    ||||||    
T  10274558 ggatct 10274553  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 37527034 - 37527111
Alignment:
Q  94 aaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctcttga-ttttcttaggatcttgttgtg 170  Q
    |||||||||||||| ||||||||||| |||||||| || || | ||  |||||||| ||||||||||||||| |||||    
T  37527034 aaacaccttggataatgagatctcattagaggaaggatctatgtttcttctcttgatttttcttaggatcttcttgtg 37527111  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 11292501 - 11292413
Alignment:
Q  63 gtgaggttctagggtttgagaaaa-acattttaaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctcttgat 150  Q
    ||||| || ||||||| ||||||| ||||| |||||| ||||||||||||||  || | |||| |||||| |||| ||||| |||||||    
T  11292501 gtgagattttagggttagagaaaacacattctaaacatcttggatagtgagacttcgttagagaaagaatctaagttttctttcttgat 11292413  T

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