View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11809_low_43 (Length: 343)

Name: NF11809_low_43
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11809_low_43
NF11809_low_43
[»] chr1 (1 HSPs)
chr1 (1-338)||(7390118-7390455)
[»] chr2 (4 HSPs)
chr2 (65-323)||(235361-235617)
chr2 (84-165)||(32791845-32791926)
chr2 (1-39)||(235649-235687)
chr2 (97-153)||(21628103-21628159)
[»] chr7 (2 HSPs)
chr7 (97-268)||(48299827-48299996)
chr7 (1-39)||(48300072-48300110)
[»] chr6 (2 HSPs)
chr6 (84-167)||(16571692-16571776)
chr6 (84-166)||(16873696-16873779)
[»] scaffold0256 (2 HSPs)
scaffold0256 (101-165)||(11940-12004)
scaffold0256 (1-37)||(12050-12086)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 7390118 - 7390455
Alignment:
Q  1 tatcatgaaaagaccccagaacaggtactaaatcccagcnnnnnnnncaaatagatgtcccatagcatacaagtgcttacgttatatctgatgttcagta 100  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7390118 tatcatgaaaagaccccagaacaggtactaaatcccagcttttttttcaaatagatgtcccatagcatacaagtgcttacgttatatctgatgttcagta 7390217  T
Q  101 atataattttaatagatccaatgtcactgctctaaagaaatctctgtttgatttttcatagaaatagnnnnnnnntaaaaggtgatctggattgcagttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  7390218 atataattttaatagatccaatgtcactgctctaaagaaatctctgtttgatttttcatagaaatagaaaaaaaataaaaggtgatctggattgcagttt 7390317  T
Q  201 agctgccttatttatctttacattgacattgagtggggattaatcaattttgtggtataatattattgcttaactgggctacttcaaacagaagttaaat 300  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7390318 agctgccttatttatctttacattgacattgagtgggggttaatcaattttgtggtataatattattgctcaactgggctacttcaaacagaagttaaat 7390417  T
Q  301 ttgattattggctgcatatttctgctctctctgctgct 338  Q
    |||||||||||||||||||||||||||||| |||||||    
T  7390418 ttgattattggctgcatatttctgctctctttgctgct 7390455  T

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Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 65 - 323
Target Start/End: Complemental strand, 235617 - 235361
Alignment:
Q  65 gcatacaagtgcttacgttatatctgatgttcagtaatataattttaatagatccaatgtcactgctctaaagaaatctctgtttgatttttcatagaaa 164  Q
    ||||||| |||||||  ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  235617 gcatacaggtgcttaaattatatctgatgttcagtaatataattataatatatccaacgtcactgctctaaagaaatctctgtctgatttttcatagaaa 235518  T
Q  165 tagnnnnnnnntaaaaggtgatctggattgcagtttagctgccttatttatctttacattgacattgagtggggattaatcaattttgtggtataatatt 264  Q
    |||        ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  235517 tagaaaaaa--taaaaggtgatctggattgcagtttagttgccttatttatctttacattgacattgagtggggattaatcaattttgaggtataatatt 235420  T
Q  265 attgcttaactgggctacttcaaacagaagttaaatttgattattggctgcatatttct 323  Q
    |||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  235419 attgctcaactgggctacttcaaacagaaattaaatttgattgttggctgcatatttct 235361  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 32791845 - 32791926
Alignment:
Q  84 atatctgatgttcagtaatataattttaatagatccaatgtcactgctctaaagaaatctctgtttgatttttcatagaaat 165  Q
    |||| ||||||| | |||||||||| |||||||||| | ||||||||| ||||||||| | |||| ||||||||||||||||    
T  32791845 atatatgatgttgaataatataattgtaatagatccgaagtcactgctttaaagaaatttatgttagatttttcatagaaat 32791926  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 235687 - 235649
Alignment:
Q  1 tatcatgaaaagaccccagaacaggtactaaatcccagc 39  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  235687 tatcatgaaaagactccagaacaggtactaaatcccagc 235649  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 21628103 - 21628159
Alignment:
Q  97 agtaatataattttaatagatccaatgtcactgctctaaagaaatctctgtttgatt 153  Q
    |||||||||||| |||||||||| |||||||| || ||||||||| | |||||||||    
T  21628103 agtaatataattgtaatagatccgatgtcactactttaaagaaatttatgtttgatt 21628159  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 268
Target Start/End: Complemental strand, 48299996 - 48299827
Alignment:
Q  97 agtaatataattttaatagatccaatgtcactgctctaaagaaatctctgtttgatttttcatagaaatagnnnnnnnntaaaaggtgatctggattgca 196  Q
    |||||||||||||| || ||||||| || |||||||||||||| || |||||||||||||||||||||||         | ||  ||| ||| |||||||    
T  48299996 agtaatataatttttatggatccaaagtgactgctctaaagaattccctgtttgatttttcatagaaata-atttaaaatcaactgtgctcttgattgca 48299898  T
Q  197 gtttagctgccttatttatctttacattgacattgagtggggattaatcaattttgtggtataatattattg 268  Q
    |||||| ||| ||||||||||||||||| | ||||| | |||||||||||||| || |||||||||||||||    
T  48299897 gtttaggtgctttatttatctttacattcatattgact-gggattaatcaattatgaggtataatattattg 48299827  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 48300110 - 48300072
Alignment:
Q  1 tatcatgaaaagaccccagaacaggtactaaatcccagc 39  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  48300110 tatcatgaaaagactccagaacaggtactcaatcccagc 48300072  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 16571692 - 16571776
Alignment:
Q  84 atatctgatgttcagtaatat--aattttaatagatccaatgtcactgctctaaagaaatctctgtttgatttttcatagaaatag 167  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||||| || ||||||||  ||||||||||||||||||||||||    
T  16571692 atatatgatgttcagtaatatataattttaatagatccaatgtcactgttc-aaagaaattcctgtttgatttttcatagaaatag 16571776  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 16873696 - 16873779
Alignment:
Q  84 atatctgatgttcagtaatat--aattttaatagatccaatgtcactgctctaaagaaatctctgtttgatttttcatagaaata 166  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||||| || |||||| |  ||||||| |||||||||||||||    
T  16873696 atatatgatgttcagtaatatataattttaatagatccaatgtcactgttc-aaagaagttcctgtttgctttttcatagaaata 16873779  T

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Target: scaffold0256 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 12004 - 11940
Alignment:
Q  101 atataattttaatagatccaatgtcactgctctaaagaaatctctgtttgatttttcatagaaat 165  Q
    |||||||||||||||||| |||||||||| | |||||| ||  ||||||||||||||||||||||    
T  12004 atataattttaatagatcaaatgtcactggtttaaagatattcctgtttgatttttcatagaaat 11940  T

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Target: scaffold0256; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12086 - 12050
Alignment:
Q  1 tatcatgaaaagaccccagaacaggtactaaatccca 37  Q
    |||||||||||||| | ||||||||||||||||||||    
T  12086 tatcatgaaaagactctagaacaggtactaaatccca 12050  T

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