View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_55 (Length: 289)
Name: NF11809_low_55
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_55 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 13296 - 13546
Alignment:
| Q |
1 |
tataaaaactgatgtaggttgattcttagtacgtcgtcctctacggactttcatattaagtggttattttttcacaccactttgactctcttaaggtgag |
100 |
Q |
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| T |
13296 |
tataaaaactgatgtaggttgattcttagtacgtcgtcctctacggactttcatattaagtggttatcttttcacaccaatttgactctcttaaggtgag |
13395 |
T |
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| Q |
101 |
aaacttccaaccttgataaattttcttaatactaatatcaagagtcagtccctcaaaaatatatcaaggtctacaatccaacaacccggactactttatt |
200 |
Q |
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| T |
13396 |
aaacttccaaccttgataaattttcttaatactaatatcaagagtcagtccctcaaaaatatatcaaggtctacaatccaacagaccggactactttatt |
13495 |
T |
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| Q |
201 |
atactctttatcatgaaacctactataaagaaatcaagcacaaaatcatga |
251 |
Q |
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| T |
13496 |
acactctttatcatgaaacctactataaagaaatcaagcacaaaatcatga |
13546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 42933475 - 42933225
Alignment:
| Q |
1 |
tataaaaactgatgtaggttgattcttagtacgtcgtcctctacggactttcatattaagtggttattttttcacaccactttgactctcttaaggtgag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
42933475 |
tataaaaactgatgtaggttgattcttagtacgtcgtcctctacggactttcatattaagtggttatcttttcacaccaatttgactctcttaaggtgag |
42933376 |
T |
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| Q |
101 |
aaacttccaaccttgataaattttcttaatactaatatcaagagtcagtccctcaaaaatatatcaaggtctacaatccaacaacccggactactttatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42933375 |
aaacttccaaccttgataaattttcttaatactaatatcaagagtcagtccctcaaaaatatatcaaggtctacaatccaacagaccggactactttatt |
42933276 |
T |
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| Q |
201 |
atactctttatcatgaaacctactataaagaaatcaagcacaaaatcatga |
251 |
Q |
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| T |
42933275 |
acactctttatcatgaaacctactataaagaaatcaagcacaaaatcatga |
42933225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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