View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11809_low_59 (Length: 282)

Name: NF11809_low_59
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11809_low_59
NF11809_low_59
[»] chr3 (4 HSPs)
chr3 (20-271)||(47986453-47986704)
chr3 (20-271)||(47995740-47995991)
chr3 (20-271)||(48005027-48005278)
chr3 (20-271)||(48014312-48014563)
[»] chr6 (15 HSPs)
chr6 (46-247)||(5097012-5097213)
chr6 (24-201)||(5397232-5397409)
chr6 (28-178)||(5354259-5354409)
chr6 (46-203)||(5128037-5128194)
chr6 (48-203)||(5157248-5157403)
chr6 (57-203)||(5370886-5371032)
chr6 (55-132)||(5284077-5284154)
chr6 (46-127)||(5137362-5137443)
chr6 (20-192)||(5066325-5066497)
chr6 (20-140)||(5073591-5073711)
chr6 (43-151)||(5177043-5177151)
chr6 (21-81)||(5257070-5257130)
chr6 (43-151)||(5278870-5278978)
chr6 (57-127)||(5102310-5102380)
chr6 (166-203)||(5434612-5434649)
[»] chr7 (1 HSPs)
chr7 (60-139)||(36213513-36213592)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 47986704 - 47986453
Alignment:
Q  20 ccatgaactatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatatt 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47986704 ccatgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatatt 47986605  T
Q  120 ttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctacagtttcaggatcaaaat 219  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47986604 ttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggatcaaaat 47986505  T
Q  220 attccttcaaatctctcttaattcaaatattctttgttgacatacattctct 271  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47986504 attccttcaaatctcttttaattcaaatattctttgttgacatacattctct 47986453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 47995991 - 47995740
Alignment:
Q  20 ccatgaactatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatatt 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47995991 ccatgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatatt 47995892  T
Q  120 ttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctacagtttcaggatcaaaat 219  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47995891 ttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggatcaaaat 47995792  T
Q  220 attccttcaaatctctcttaattcaaatattctttgttgacatacattctct 271  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47995791 attccttcaaatctcttttaattcaaatattctttgttgacatacattctct 47995740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 48005278 - 48005027
Alignment:
Q  20 ccatgaactatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatatt 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48005278 ccatgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatatt 48005179  T
Q  120 ttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctacagtttcaggatcaaaat 219  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48005178 ttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggatcaaaat 48005079  T
Q  220 attccttcaaatctctcttaattcaaatattctttgttgacatacattctct 271  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48005078 attccttcaaatctcttttaattcaaatattctttgttgacatacattctct 48005027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 48014563 - 48014312
Alignment:
Q  20 ccatgaactatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatatt 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48014563 ccatgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatatt 48014464  T
Q  120 ttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctacagtttcaggatcaaaat 219  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48014463 ttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggatcaaaat 48014364  T
Q  220 attccttcaaatctctcttaattcaaatattctttgttgacatacattctct 271  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48014363 attccttcaaatctcttttaattcaaatattctttgttgacatacattctct 48014312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 247
Target Start/End: Original strand, 5097012 - 5097213
Alignment:
Q  46 accttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttggatgcattatttgccacagtttt 145  Q
    |||||| ||| |||||||||||||||||||| |||| |||||||  |||||||||||  |||||   ||  ||||||||||| |||| |||||||| ||     
T  5097012 accttccaagtcttcgaagtctttgggtggagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagatta 5097111  T
Q  146 taaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctacagtttcaggatcaaaatattccttcaaatctctcttaattcaa 245  Q
    |||||  || |||||||||||||  ||||||||  |||||||||||||||||||||||     || |||| || |||||||||| ||||| |||||||||    
T  5097112 taaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattccttcaagtctcttttaattcaa 5097211  T
Q  246 at 247  Q
    ||    
T  5097212 at 5097213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 5397232 - 5397409
Alignment:
Q  24 gaactatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttgg 123  Q
    |||||||| |||||||| || || |||| |||||||||||||||||| ||||||||||| || |||  |||||||||||| ||||||||||  |||||||    
T  5397232 gaactatcatctttttcgaaacaacttccaaggcttcgaagtctttgcgtggattgcaattctgaagatcaactttctcttgatgcaaaaataattttgg 5397331  T
Q  124 atgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttcta 201  Q
    ||||  ||| ||| |||  || ||| || |||||||||| |  ||| |||||||||  ||| ||||||||||||||||    
T  5397332 atgctctatgtgctacaaattctaaagaattggaatcaactaaaactacatcacaagaatccaatatgactacttcta 5397409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 5354409 - 5354259
Alignment:
Q  28 tatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttggatgc 127  Q
    |||| ||||||||| ||||||||| ||| |||||||||||| ||||||||||||| || | |  |||||||||||| ||||||||||  |||||| ||||    
T  5354409 tatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgc 5354310  T
Q  128 attatttgccacagtttttaaggatttggaatcaattgcaacaacatcaca 178  Q
      ||| |||||| |||| |||||| || ||||||| |||||| ||||||||    
T  5354309 cctatatgccactgtttctaaggaatttgaatcaactgcaactacatcaca 5354259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 203
Target Start/End: Complemental strand, 5128194 - 5128037
Alignment:
Q  46 accttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttggatgcattatttgccacagtttt 145  Q
    |||||| ||| ||||||||||||||| |||| |||| |||||||  |||||||||||  ||||||  ||  ||||||||||| || | |||||||  ||     
T  5128194 accttccaagtcttcgaagtctttggatggagtgcagctcagaacttcaactttctcatgatgcagcaataattttggatgccttgtatgccacaaatta 5128095  T
Q  146 taaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctaca 203  Q
    |||||| ||||||  || |||||  ||||||||| |||||| ||||||||||||||||    
T  5128094 taaggagttggaacaaactgcaagtacatcacaagtatcaattatgactacttctaca 5128037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 203
Target Start/End: Complemental strand, 5157403 - 5157248
Alignment:
Q  48 cttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttggatgcattatttgccacagttttta 147  Q
    |||| ||| ||||||||||| |||||||| |||| ||| |||  |||||||||||  ||||||  ||  |||||||||||  | | |||||||  || ||    
T  5157403 cttccaagtcttcgaagtctatgggtggagtgcagctcggaacttcaactttctcatgatgcagcaataattttggatgccctgtatgccacaaattcta 5157304  T
Q  148 aggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctaca 203  Q
    || |||||||| ||| | || | |||||||||||||||||| ||||||||||||||    
T  5157303 agaatttggaaccaactacagctacatcacaattatcaaatgtgactacttctaca 5157248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 203
Target Start/End: Original strand, 5370886 - 5371032
Alignment:
Q  57 cttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttggatgcattatttgccacagtttttaaggatttgg 156  Q
    |||||||||||||||||||| || | ||| |||  |||||||||||  ||||||  ||  ||||||||||  |||| ||| | || || ||||||  |||    
T  5370886 cttcgaagtctttgggtggaatgtagctcggaacttcaactttctcatgatgcagcaacaattttggatgtcttatatgcgatagattataaggagatgg 5370985  T
Q  157 aatcaattgcaacaacatcacaattatcaaatatgactacttctaca 203  Q
    || ||| |||||  ||||||||| ||||||||| |||||||||||||    
T  5370986 aaccaactgcaattacatcacaagtatcaaataagactacttctaca 5371032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 5284154 - 5284077
Alignment:
Q  55 ggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttggatgcattat 132  Q
    |||||| |||||||||||||||||||||||| |||  |||||||||||| ||| ||| ||  ||||||||||| ||||    
T  5284154 ggcttcaaagtctttgggtggattgcaactccgaagatcaactttctcttgattcaacaatgattttggatgctttat 5284077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 5137443 - 5137362
Alignment:
Q  46 accttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttggatgc 127  Q
    |||||| ||| |||||||||||||||||||| ||||  |||||| ||||||||||||  ||||||  ||  |||||||||||    
T  5137443 accttccaagtcttcgaagtctttgggtggagtgcagttcagaacgtcaactttctcatgatgcagcaataattttggatgc 5137362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 5066497 - 5066325
Alignment:
Q  20 ccatgaactatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatatt 119  Q
    |||||||||||| ||  |||| ||  |||||| ||| |||||||||||||||||||| ||||  ||||||  ||||||||||   ||||||| ||  ||     
T  5066497 ccatgaactatcatcaatttccaagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagaacatcaactttctaatgatgcaacaataata 5066398  T
Q  120 ttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatga 192  Q
    |||||||| ||||  || ||  ||| ||||||| ||||||| | | || | || |||||| ||||||||||||    
T  5066397 ttggatgctttatacgctactctttctaaggatgtggaatcgacttcagctacttcacaaatatcaaatatga 5066325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 5073711 - 5073591
Alignment:
Q  20 ccatgaactatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatatt 119  Q
    |||||||||||| ||| |||| ||  |||||| | |||||||| ||||||||||||| |||   ||| ||  |||||||||||  |||||| |||  |||    
T  5073711 ccatgaactatcatctatttccaattaccttccatggcttcgatgtctttgggtggaatgcggatcaaaacttcaactttctcaagatgcagaaagaatt 5073612  T
Q  120 ttggatgcattatttgccaca 140  Q
    |||||||| |||| |||||||    
T  5073611 ttggatgccttatatgccaca 5073591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 5177043 - 5177151
Alignment:
Q  43 accaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttggatgcattatttgccacagt 142  Q
    ||||||||  ||||||||||||||| ||||| || ||    ||||||  |||||||||| | ||||||||||  ||||||||||| |||| ||||||| |    
T  5177043 accacctttcaaggcttcgaagtctatgggtagagtgtggttcagaacttcaactttctgtagatgcaaaaatcattttggatgctttatatgccacaat 5177142  T
Q  143 ttttaagga 151  Q
    || ||||||    
T  5177143 ttctaagga 5177151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 5257130 - 5257070
Alignment:
Q  21 catgaactatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtggattgca 81  Q
    |||||||| || |||||||| ||||| |||| |||||||  ||||||||||||||||||||    
T  5257130 catgaactttcatctttttcgaaccaacttccaaggcttaaaagtctttgggtggattgca 5257070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 5278870 - 5278978
Alignment:
Q  43 accaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttggatgcattatttgccacagt 142  Q
    ||||||||  ||||||||||||||| ||||| || ||    ||||||  |||||||||| | ||||||||||  ||||||||||| |||| ||||||| |    
T  5278870 accacctttcaaggcttcgaagtctatgggtagagtgtggttcagaacttcaactttctgtagatgcaaaaatcattttggatgctttatatgccacaat 5278969  T
Q  143 ttttaagga 151  Q
    || ||||||    
T  5278970 ttctaagga 5278978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 5102380 - 5102310
Alignment:
Q  57 cttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttggatgc 127  Q
    |||||||||||||||||||| ||||  |||||| ||||||||||||  ||||||  ||  |||||||||||    
T  5102380 cttcgaagtctttgggtggagtgcagttcagaacgtcaactttctcatgatgcagcaataattttggatgc 5102310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 5434612 - 5434649
Alignment:
Q  166 caacaacatcacaattatcaaatatgactacttctaca 203  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  5434612 caactacatcacaagtatcaaatatgactacttctaca 5434649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 36213592 - 36213513
Alignment:
Q  60 cgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgcaaaaaatattttggatgcattatttgccac 139  Q
    ||||||||||||||| | |||| |||||| | |||||||||||  |||||| |||  ||||||||||| |||| ||||||    
T  36213592 cgaagtctttgggtgcagtgcagctcagagtctcaactttctcatgatgcagaaataattttggatgccttatatgccac 36213513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University