View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11809_low_65 (Length: 270)
Name: NF11809_low_65
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_65 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 3855628 - 3855371
Alignment:
| Q |
1 |
ctgctattgatcgcgaaataaaacatgccaagaacatcgcgaatgattttgaaccgtttgatctagacctttaattacaatacatgggtggtttgaaata |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3855628 |
ctgctattgatcgcgaaagaaaacatgccaagaacatcgcgaatgattttgaaccgtttgatctagacctttaattacaatacatgggtggtttgaaata |
3855529 |
T |
|
| Q |
101 |
aaatgatgtagaaagatattaaaattttaccgtcgtccatcgggatgttgtcgtgaaaggaattctcgtgataaatagcattttccttttttgaatcttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3855528 |
aaatgatgtagaaagatattaaaattttaccgtcgtccatcgggatgttgtcgtgaaaggaattcttgtgataaatagcattttccttttttgaatcttt |
3855429 |
T |
|
| Q |
201 |
gttgaggttctttcccaccttcattttgaacataagtgtatcctcctccattttgatg |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3855428 |
gttgaggttctttcccaccttcattttgaacataagtgtatcctcctccattttgatg |
3855371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 24241982 - 24242159
Alignment:
| Q |
2 |
tgctattgatcgcgaaataaaacatgccaagaacatcgcgaatgattttgaaccgtttgatctagacctttaattacaatacatgggtggtttgaaataa |
101 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
24241982 |
tgctattgatcgcgaaagaaaacatgccgagaacatcgcgaatgattttgaaccgtttgatctaggcctttaattaaaatacatgggtggttggaaataa |
24242081 |
T |
|
| Q |
102 |
aatgatgtagaaagatattaaaattttaccgtcgtccatcgggatgttgtcgtgaaaggaattctcgtgataaatagcattttcc |
186 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||||||||||||||||| ||||| || |||||| ||||||||||| |
|
|
| T |
24242082 |
aatggtgtagaaagatattaaaattgta-------ccatcgggatgttgtcgtgaaaagaattttcatgataagtagcattttcc |
24242159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University