View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11809_low_67 (Length: 268)

Name: NF11809_low_67
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11809_low_67
NF11809_low_67
[»] chr1 (2 HSPs)
chr1 (16-183)||(23996777-23996944)
chr1 (39-101)||(42785579-42785641)
[»] chr5 (5 HSPs)
chr5 (16-119)||(27843195-27843298)
chr5 (57-183)||(32251854-32251980)
chr5 (39-101)||(34177448-34177510)
chr5 (228-268)||(27842490-27842530)
chr5 (230-266)||(34685818-34685854)
[»] chr3 (3 HSPs)
chr3 (45-172)||(45967269-45967396)
chr3 (39-101)||(23049861-23049923)
chr3 (47-99)||(4740747-4740799)
[»] chr7 (2 HSPs)
chr7 (45-183)||(25107037-25107175)
chr7 (39-101)||(35515875-35515937)
[»] chr4 (4 HSPs)
chr4 (47-101)||(26169516-26169570)
chr4 (39-101)||(32807723-32807785)
chr4 (44-87)||(13136840-13136883)
chr4 (45-99)||(22495664-22495718)
[»] chr2 (1 HSPs)
chr2 (39-133)||(21578958-21579052)
[»] chr8 (1 HSPs)
chr8 (47-101)||(38738170-38738224)
[»] chr6 (1 HSPs)
chr6 (47-101)||(18673110-18673164)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 23996944 - 23996777
Alignment:
Q  16 cagatacacctacccaccgatatatatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcc 115  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||||| || ||||||||||||||   ||||||||||||    
T  23996944 cagatacacctacccaccgataaatatagctccaaacaaagccaaacaaattacaacgtaaaaataagtgggaagatgattccacgacaccacatcctcc 23996845  T
Q  116 tatataagattgagcctctagatcaataacccgacggcataatagattgtccttggtagagagtctat 183  Q
    |||| || |||| || ||||  |||||||| ||||| || ||||||||||||||||||||||||||||    
T  23996844 tatacaatattgggcatctatgtcaataactcgacgacagaatagattgtccttggtagagagtctat 23996777  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 42785641 - 42785579
Alignment:
Q  39 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 101  Q
    |||| |||||||||||| ||||| | ||||||||| |||||||| |||||||||| |||||||    
T  42785641 atatggttccaaacagatccaaaaatattacaatgaaaaaataagtgagaagatgtttccacc 42785579  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 27843298 - 27843195
Alignment:
Q  16 cagatacacctacccaccgatatatatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||   |||||||||||    
T  27843298 cagatacacctacccaccgatatatatagttccaaacagagccaaataaattacaatgtaaaaataagtgggaagatgattccacctcgccacatcctcc 27843199  T
Q  116 tata 119  Q
    ||||    
T  27843198 tata 27843195  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 32251980 - 32251854
Alignment:
Q  57 ccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctctagatcaataacccgacggcata 156  Q
    ||||| ||||||||||| |||||||| || ||||||| ||||||| ||||||| ||||||| | |||||||||| |||| ||||||||| || ||    |    
T  32251980 ccaaataaattacaatgcaaaaataaatgggaagatgtttccaccaaaccacaccctcctacacaagattgagcttctatatcaataactcgccgatgga 32251881  T
Q  157 atagattgtccttggtagagagtctat 183  Q
    | ||||||||||| |||||||||||||    
T  32251880 aaagattgtccttagtagagagtctat 32251854  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 34177510 - 34177448
Alignment:
Q  39 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 101  Q
    |||||||||||||| || ||||| ||||||||||| || ||||| |||||||||| |||||||    
T  34177510 atatagttccaaactgaaccaaaaaaattacaatgaaataataagtgagaagatgtttccacc 34177448  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 27842530 - 27842490
Alignment:
Q  228 ttattaaaatagcatattagagaaagcatctgcagcaaaag 268  Q
    |||||||||||||||||||||||||||| |||| |||||||    
T  27842530 ttattaaaatagcatattagagaaagcacctgcggcaaaag 27842490  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 34685818 - 34685854
Alignment:
Q  230 attaaaatagcatattagagaaagcatctgcagcaaa 266  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  34685818 attaaaatagtatattagagaaagcacctgcagcaaa 34685854  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 45967269 - 45967396
Alignment:
Q  45 ttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctctagatcaataa 144  Q
    ||||||||| ||||||| ||| |||||||||||||||| |||| ||||| ||| ||| ||||||| ||||||| | |||||||||| |||| |||||| |    
T  45967269 ttccaaacatagccaaataaactacaatgtaaaaataagtgaggagatgtttcgaccaaaccacaacctcctacacaagattgagcttctacatcaatga 45967368  T
Q  145 cccgacggcataatagattgtccttggt 172  Q
      ||||| |  || ||||||||||||||    
T  45967369 ttcgacgacgaaagagattgtccttggt 45967396  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 23049923 - 23049861
Alignment:
Q  39 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 101  Q
    |||| ||| |||||||| ||||||||||||||||||||||| |  |||||||||  |||||||    
T  23049923 atatggtttcaaacagacccaaacaaattacaatgtaaaaaaaggtgagaagatatttccacc 23049861  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 4740799 - 4740747
Alignment:
Q  47 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattcca 99  Q
    ||||||||| ||||| |||||||||||||||||||| ||   |||||||||||    
T  4740799 ccaaacagatccaaaaaaattacaatgtaaaaataagtgttgagatgattcca 4740747  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 45 - 183
Target Start/End: Original strand, 25107037 - 25107175
Alignment:
Q  45 ttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctctagatcaataa 144  Q
    ||||||||| ||||||| |||||||| ||||||||||| || | ||||| ||| ||| ||||||| ||||||| | |||||||||| |||| |||||| |    
T  25107037 ttccaaacacagccaaataaattacagtgtaaaaataagtgtggagatgtttcgaccaaaccacaacctcctacacaagattgagcttctacatcaatga 25107136  T
Q  145 cccgacggcataatagattgtccttggtagagagtctat 183  Q
      ||||| |  || |||||||||||||| || |||||||    
T  25107137 ttcgacgacgaaagagattgtccttggtcgatagtctat 25107175  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 35515937 - 35515875
Alignment:
Q  39 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 101  Q
    |||| |||||||| ||||||||||||| ||||||||||||| |  |||||||||| |||||||    
T  35515937 atatggttccaaatagagccaaacaaaatacaatgtaaaaaaaggtgagaagatgtttccacc 35515875  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 26169516 - 26169570
Alignment:
Q  47 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 101  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||    
T  26169516 ccaaacagagccaaataaattacaatgtaaaaataagtgagaatatgtttccacc 26169570  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 32807723 - 32807785
Alignment:
Q  39 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 101  Q
    |||| |||||||||||| ||||| | |||||||||||||||||| |||||| ||| |||||||    
T  32807723 atatggttccaaacagacccaaaaacattacaatgtaaaaataagtgagaatatgtttccacc 32807785  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 13136883 - 13136840
Alignment:
Q  44 gttccaaacagagccaaacaaattacaatgtaaaaataactgag 87  Q
    |||||||||||||||||| | |||||||||||||||||| ||||    
T  13136883 gttccaaacagagccaaaaagattacaatgtaaaaataaatgag 13136840  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 22495664 - 22495718
Alignment:
Q  45 ttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattcca 99  Q
    ||||||||||| ||||| |||| ||||||||||||||  |||||||||| |||||    
T  22495664 ttccaaacagaaccaaaaaaatcacaatgtaaaaatagatgagaagatgtttcca 22495718  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 21578958 - 21579052
Alignment:
Q  39 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctc 133  Q
    |||| |||||||||| ||||| | ||| |||||||||||||||| || ||||||| ||| ||| | || || ||||||| | |||||||||||||    
T  21578958 atatggttccaaacacagccatagaaactacaatgtaaaaataagtgtgaagatgtttctaccaagccgcaacctcctacacaagattgagcctc 21579052  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 38738224 - 38738170
Alignment:
Q  47 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 101  Q
    |||||||||||||||||||  ||||||||| ||||| || ||||||| |||||||    
T  38738224 ccaaacagagccaaacaaagaacaatgtaacaataagtgtgaagatgtttccacc 38738170  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 18673164 - 18673110
Alignment:
Q  47 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 101  Q
    |||||||||||||||||||  ||||||||| ||||| || ||||||| |||||||    
T  18673164 ccaaacagagccaaacaaagaacaatgtaacaataagtgtgaagatgtttccacc 18673110  T

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