View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_68 (Length: 268)
Name: NF11809_low_68
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 151 - 262
Target Start/End: Original strand, 8394409 - 8394520
Alignment:
| Q |
151 |
taacattcaaatttcaaacattacaattaaccaaaccttttttatttccccaactatatactaatcctaaacacacacatcataacaataaataccttca |
250 |
Q |
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| T |
8394409 |
taacattcaaatttcaaacattacaattaaccaaaccttttttatttccccaactatatactaatcctaaacacacacatcataacaataaacaccttca |
8394508 |
T |
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| Q |
251 |
aataatatatat |
262 |
Q |
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|||||||||||| |
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| T |
8394509 |
aataatatatat |
8394520 |
T |
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Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 8394273 - 8394366
Alignment:
| Q |
3 |
cagagaccttgtcaattatttaatcaaactagtcaaccagaattttcttatctgattttgaccctttccttacccatccctttggttctttgct |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8394273 |
cagagaccttgtcaattatttaatcaaactagtcaaccagaattttcttatctgattttgaccctttccttacccatccctttggttctttgct |
8394366 |
T |
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