View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_69 (Length: 265)
Name: NF11809_low_69
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_69 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 265
Target Start/End: Original strand, 39239803 - 39240056
Alignment:
| Q |
12 |
gagaagtacaaagagtgcttaattcaaaattcagaaaaaatacaagagatacttgactcacataagaacccaaatacgattaagtattaaatcacacaag |
111 |
Q |
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| T |
39239803 |
gagaagtacaaagagtgcttaattcaaaattcagaaaaaatacaagagatacttgactcacataagaacccaaatacgattaagtattaaatcacacaag |
39239902 |
T |
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| Q |
112 |
ggggttcaaaaactattcaaaatacatacaagaccccctttgttcctaacaagaaaccacctccaagaggttaattcgatgtcgtcaacattctcttcaa |
211 |
Q |
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| T |
39239903 |
ggggttcaaaaactattcaaaatacatacaagaccccctttgttcctaacaagaaaccacctccaagaggttaattcgatgtcgtcaacattctcttcaa |
39240002 |
T |
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| Q |
212 |
cctccaagttcttttaagaaaaaataaagttaaattgcatttttggtcccttaa |
265 |
Q |
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| T |
39240003 |
cctccaagttcttttaagaaaaaataaagctaaattgcatttttggtcccttaa |
39240056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 30469197 - 30469138
Alignment:
| Q |
120 |
aaaactattcaaaatacatacaagaccccctttgttcctaacaagaaaccacctccaaga |
179 |
Q |
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| T |
30469197 |
aaaaccattcaaaatacatacaagacccccttttaaccttataagaaaccacctccaaga |
30469138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 24604865 - 24604901
Alignment:
| Q |
230 |
aaaaaataaag-ttaaattgcatttttggtcccttaa |
265 |
Q |
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| T |
24604865 |
aaaaaataaaggttaaattgcatttttggtcccttaa |
24604901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 21918487 - 21918523
Alignment:
| Q |
230 |
aaaaaataaag-ttaaattgcatttttggtcccttaa |
265 |
Q |
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||||||||||| ||||||||||||||||||||||||| |
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| T |
21918487 |
aaaaaataaaggttaaattgcatttttggtcccttaa |
21918523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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