View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_7 (Length: 596)
Name: NF11809_low_7
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_7 |
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| [»] scaffold0381 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 139 - 587
Target Start/End: Original strand, 54657953 - 54658414
Alignment:
| Q |
139 |
cttcttctacttgatatcccttgattattaatgaaatgtagcacctctcctttcctttgatttnnnnnnngtgagcagctctcttcagaagagtcgggtc |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||| |
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| T |
54657953 |
cttcttctacttgatatcccttgattattaatgaaatgtagcacctcttcttt-----gatttaaaaaaagtgagcagctcgcttcagaagagtcgggtc |
54658047 |
T |
|
| Q |
239 |
cgtctcgagagacctactaacctacctgttagttgtcgttgctggccagtgacatagtgccacgagctattacgtgattgtcacagatttaaaaaccgat |
338 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
54658048 |
cgtctcgagagacctac----ctacctgttagttgtcgttgctagccagtgacatagtgccacgagctattacgtgattgtcacaaatttaaaaaccgat |
54658143 |
T |
|
| Q |
339 |
catccactgtttgttttaaatctaattgctggtttgcagttgcagcgagccccacaggcaggctccaccatcgtttacgtcatgtc-atgtctcactcaa |
437 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
54658144 |
catccactgtttgttttaaatctaattgctggtttgcagttgcagcgagccccacagccaggctccaccatcgtttacgtcatgtcaatgtctcactcaa |
54658243 |
T |
|
| Q |
438 |
acctcctacctcaaacaaaataacattattc---cttccatct-----atctatccattctagcagcattcatatact----aaccagtattattatatt |
525 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
54658244 |
acctcctacctcaaacaaaataacattattcattattccatctatctaatctatccattctagcagtattcatatactaaccaaccagtattattatatt |
54658343 |
T |
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| Q |
526 |
atcaatcact------cacacacactgtcacac---ataattaacaaaacaaaataggtttgtcttcttct |
587 |
Q |
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| T |
54658344 |
atcaatcactcacacacacacacactgtcacacataataattaacaaaacaaaataggtttgtcttcttct |
54658414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 9889280 - 9889140
Alignment:
| Q |
1 |
acagactcgcgtttggaagcaaaaccacgttttgga-gaattgattctgcagctatcc-aaacataataaaaaaggctgaaaccgcgtttgagtgtcaga |
98 |
Q |
| |
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||||||||| |||||||||||||||||| |||| || ||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |
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| T |
9889280 |
acagactcgtgtttggaagcaaaaccacatttttgaagaattgattctgcagctatcccaaacataaaaaaaatggctgaaaccgcgtttgagtgtcaga |
9889181 |
T |
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| Q |
99 |
accgcgtttgggggccatcaaacgctgaaccaaacaggcac |
139 |
Q |
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| T |
9889180 |
ctcgcgtttgggggccatcaaacgcggaaccaaacaggcac |
9889140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 10469943 - 10469803
Alignment:
| Q |
1 |
acagactcgcgtttggaagcaaaaccacgttttggagaattgattctgcagctatccaaacataataaaaaaggctgaaaccgcgtttgagtgtcagaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10469943 |
acagactcgcgtttggaagcaaaaccacgttttggagaattgattctgcagctatccaaacataataaaaaaggctgaaaccgcgtttgagtgtcagaac |
10469844 |
T |
|
| Q |
101 |
cgcgtttgggggccatcaaacgctgaaccaaacaggcactt |
141 |
Q |
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| T |
10469843 |
cgcgtttgggggccatcaaacgctgaaccaaacaggcactt |
10469803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 5e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 48190213 - 48190352
Alignment:
| Q |
1 |
acagactcgcgtttggaagcaaaaccacgttttggagaattgattctgcagctatccaaacataataaaaaaggctgaaaccgcgtttgagtgtcagaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48190213 |
acagactcgcgtttggaagcaaaaccacgttttggagaattgattctgcagctatccaaacataataaaaaaggctgaaaccgcgtttgagtgtcagaac |
48190312 |
T |
|
| Q |
101 |
cgcgtttgggggccatcaaacgctgaaccaaacaggcact |
140 |
Q |
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| T |
48190313 |
cgcgtttgggggccatcaaacgctgaaccaaacaggcact |
48190352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 33581691 - 33581755
Alignment:
| Q |
76 |
tgaaaccgcgtttgagtgtcagaaccgcgtttgggggccatcaaacgctgaaccaaacaggcact |
140 |
Q |
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| T |
33581691 |
tgaaaccgcgtttgagtgtcggactcgcgtttggaggccatctaatgcggaaccaaacaggcact |
33581755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 8169651 - 8169512
Alignment:
| Q |
1 |
acagactcgcgtttggaagcaaaaccacgttttggagaattgattctgcagctatccaaacataataaaaaaggctgaaaccgcgtttgagtgtcagaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8169651 |
acagactcgcgtttggaagcaaaaccacgttttggagaattgattctgcagctatccaaacataataaaaaaggctgaaaccgcgtttgagtgtcagaac |
8169552 |
T |
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| Q |
101 |
cgcgtttgggggccatcaaacgctgaaccaaacaggcact |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
8169551 |
cgcgtttgggggccatcaaacgctgaaccaaacaggcact |
8169512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 7714275 - 7714135
Alignment:
| Q |
1 |
acagactcgcgtttggaagcaaaaccacgttttggagaattgattctgcagctatccaaacataataaaaa-aggctgaaaccgcgtttgagtgtcagaa |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |
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| T |
7714275 |
acagactcgcgtttggaagcaaaaccacgttttggagaattgattctgcagctatccaaacataaaaaaaagaggatgaaaccgcgtttgagtgtcagac |
7714176 |
T |
|
| Q |
100 |
ccgcgtttgggggccatcaaacgctgaaccaaacaggcact |
140 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |||| |
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| T |
7714175 |
tcgcgtttgggggccatcaaacgcggaaccaaacagacact |
7714135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0381 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: scaffold0381
Description:
Target: scaffold0381; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 9266 - 9405
Alignment:
| Q |
1 |
acagactcgcgtttggaagcaaaaccacgttttggagaattgattctgcagctatcc-aaacataataaaaaaggctgaaaccgcgtttgagtgtcagaa |
99 |
Q |
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||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |
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| T |
9266 |
acagactcgtgtttggaagcaaaaccacattttgaagaattgattctgcagctatcccaaacataaaaaaaatggctgaaaccgcgtttgagtgtcagac |
9365 |
T |
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| Q |
100 |
ccgcgtttgggggccatcaaacgctgaaccaaacaggcac |
139 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |
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| T |
9366 |
tcgcgtttgggggccatcaaacgcggaaccaaacaggcac |
9405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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