View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_75 (Length: 258)
Name: NF11809_low_75
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 9488528 - 9488305
Alignment:
| Q |
19 |
atcataagagtcaagtttatttcacttcttgggtttacgaccaatttagcgaagggaaggaaatagaaatggggaatggtacggaggaggaggagaagat |
118 |
Q |
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| T |
9488528 |
atcataagagtcaagtttatttcccttcttgggtttacgaccaatttagcgaagggaaggaaatagaaatggggaatggtacagaagaggaggagaagat |
9488429 |
T |
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| Q |
119 |
attgaagaagatgataata---gcgttgtggtgtatacagatgaaaccaattgaccgtccttcgatgaacaaagtggttgagttgcttgtaggagatgtt |
215 |
Q |
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| T |
9488428 |
actgaagaagatgataatagttgcattatggtgtatacagatgaaaccaattgatcgtccttcgatgaacaaagtggttgagttacttgaaggagatgtc |
9488329 |
T |
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| Q |
216 |
gagtccttggaaatgcctcctaag |
239 |
Q |
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|||||||||||||||||||||||| |
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| T |
9488328 |
gagtccttggaaatgcctcctaag |
9488305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 9459276 - 9459142
Alignment:
| Q |
108 |
gaggagaagatattgaagaagatgataatag---cgttgtggtgtatacagatgaaaccaattgaccgtccttcgatgaacaaagtggttgagttgcttg |
204 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9459276 |
gaggagaagatattgaagaagatgataatagttgcgttgtggtgtatatagatgaaaccaattgaccgtccttcgatgaacaaagtggttgagttgcttg |
9459177 |
T |
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| Q |
205 |
taggagatgttgagtccttggaaatgcctcctaag |
239 |
Q |
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| T |
9459176 |
taggagatgttgagtccttggaaatgcctcctaag |
9459142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 9463103 - 9462969
Alignment:
| Q |
108 |
gaggagaagatattgaagaagatgataatag---cgttgtggtgtatacagatgaaaccaattgaccgtccttcgatgaacaaagtggttgagttgcttg |
204 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9463103 |
gaggagaagatattgaagaagatgataatagttgcgttgtggtgtatatagatgaaaccaattgaccgtccttcgatgaacaaagtggttgagttgcttg |
9463004 |
T |
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| Q |
205 |
taggagatgttgagtccttggaaatgcctcctaag |
239 |
Q |
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| T |
9463003 |
taggagatgttgagtccttggaaatgcctcctaag |
9462969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 9435985 - 9435819
Alignment:
| Q |
24 |
aagagtcaagtttatttcacttcttgggtttacgaccaatttagcgaagggaaggaaatagaaatggggaatggtacggaggaggaggagaagatattga |
123 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||| |
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| T |
9435985 |
aagagtcaagtttatttcccttcttgggtttacgaccaatttagcgaagggaaggaaatagaaatgggaaatggtacagaagaggaggaaaagatattga |
9435886 |
T |
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| Q |
124 |
agaagatgataata---gcgttgtggtgtatacagatgaaaccaattgaccgtccttcgatgaacaa |
187 |
Q |
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| T |
9435885 |
agaagatgataatagttgcattgtggtatatacagatgaaaccaattgatcgtccgtcaatgaacaa |
9435819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 9463934 - 9463841
Alignment:
| Q |
19 |
atcataagagtcaagtttatttcacttcttgggtttacgaccaatttagcgaagggaaggaaatagaaatggggaatggtacggaggaggagga |
112 |
Q |
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| T |
9463934 |
atcataagagtcaagtttatttcacttcttgggtttacgaccaatttagcgaagggaaggaaatagaaatggggaatggtacggaggaggagga |
9463841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 9486452 - 9486525
Alignment:
| Q |
144 |
tggtgtatacagatgaaaccaattgaccgtccttcgatgaacaaagtggttgagttgcttgtaggagatgttga |
217 |
Q |
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| T |
9486452 |
tggtgtatacagttgaaacccattgatcgtccttcaatgaacaaagtagtagagatgcttgaaggagatattga |
9486525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 9399479 - 9399406
Alignment:
| Q |
144 |
tggtgtatacagatgaaaccaattgaccgtccttcgatgaacaaagtggttgagttgcttgtaggagatgttga |
217 |
Q |
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| T |
9399479 |
tggtgtatacagttgaaacccattgatcgtccttcaatgaacaaagtagtagagatgcttgaaggggatattga |
9399406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 9433100 - 9433173
Alignment:
| Q |
144 |
tggtgtatacagatgaaaccaattgaccgtccttcgatgaacaaagtggttgagttgcttgtaggagatgttga |
217 |
Q |
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| T |
9433100 |
tggtgtatacagttgaaacccgttgatcgtccttcaatgaacaaagtagtagagatgcttgaaggagatattga |
9433173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 9454087 - 9454160
Alignment:
| Q |
144 |
tggtgtatacagatgaaaccaattgaccgtccttcgatgaacaaagtggttgagttgcttgtaggagatgttga |
217 |
Q |
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| T |
9454087 |
tggtgtatacagttgaaacccattgatcgtccttcaatgaaaaaagtagtagagatgcttgaaggagatattga |
9454160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 9319764 - 9319687
Alignment:
| Q |
132 |
ataatagcgttgtggtgtatacagatgaaaccaattgaccgtccttcgatgaacaaagtggttgagttgcttgtagga |
209 |
Q |
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| T |
9319764 |
ataatagcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgcttgaagga |
9319687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 9350081 - 9350004
Alignment:
| Q |
132 |
ataatagcgttgtggtgtatacagatgaaaccaattgaccgtccttcgatgaacaaagtggttgagttgcttgtagga |
209 |
Q |
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| T |
9350081 |
ataatagcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgcttgaagga |
9350004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 235
Target Start/End: Complemental strand, 9435814 - 9435785
Alignment:
| Q |
206 |
aggagatgttgagtccttggaaatgcctcc |
235 |
Q |
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| T |
9435814 |
aggagatgttgagtccttggaaatgcctcc |
9435785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 9234322 - 9234382
Alignment:
| Q |
144 |
tggtgtatacagatgaaaccaattgaccgtccttcgatgaacaaagtggttgagttgcttg |
204 |
Q |
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|||||||| ||| ||||||| | ||| |||||||| ||||||||||| |||||| |||||| |
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| T |
9234322 |
tggtgtattcagttgaaaccgagtgatcgtccttcaatgaacaaagtagttgagatgcttg |
9234382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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