View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_77 (Length: 253)
Name: NF11809_low_77
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_77 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 29632415 - 29632193
Alignment:
| Q |
17 |
gaacaggttttgccggttttctggtaagcactggaagatcactttcaactcctcctgaaaaccaacatccaagagttggtctgcttcatccaagacaaga |
116 |
Q |
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| T |
29632415 |
gaacaggttttgccggttttctggtaagcactggaagatcactttcaactcctcctgaaaaccaacatccaagagttggtctgcttcatccaagacaaga |
29632316 |
T |
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| Q |
117 |
aactgcagaagcaagtgtcagtcaggtacagcataatcatattaacgttcgttgaatctatctagaatgttttaaaacaaagcaatgcttcataaaaatt |
216 |
Q |
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| T |
29632315 |
aactgcagaagcaagtgtcagtcaggtacagcataatcatattaacgttcgtttaatctatctagaatgtttt--------------cttcataaaaatt |
29632230 |
T |
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| Q |
217 |
tataggaatacttaatcataccggtacagtatccaat |
253 |
Q |
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| T |
29632229 |
tataggaatacttaatcataccggtacagtatccaat |
29632193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 29631200 - 29631087
Alignment:
| Q |
21 |
aggttttgccggttttctggtaagcactggaagatcactttcaactcctcctgaaaaccaacatccaagagttggtctgcttcatccaagacaagaaact |
120 |
Q |
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||||||||||||||||||||||||||||||| ||| || ||||| || ||| |||||||||||||||| |||||||||||||| ||||| |||||||||| |
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| T |
29631200 |
aggttttgccggttttctggtaagcactggacgataacattcaattcatcccgaaaaccaacatccaaaagttggtctgcttcgtccaaaacaagaaact |
29631101 |
T |
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| Q |
121 |
gcagaagcaagtgt |
134 |
Q |
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| T |
29631100 |
gcagaaacaagtgt |
29631087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 27662767 - 27662876
Alignment:
| Q |
21 |
aggttttgccggttttctggtaagcactggaagatcactttcaactcctcctgaaaaccaacatccaagagttggtctgcttcatccaagacaagaaact |
120 |
Q |
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||||||||||||||||||||||||||||| || || | |||||| || ||||||||||||||||||| || | | ||||||||||||||||||||||||| |
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| T |
27662767 |
aggttttgccggttttctggtaagcactgaaatataaatttcaattcatcctgaaaaccaacatccaggactcgatctgcttcatccaagacaagaaact |
27662866 |
T |
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| Q |
121 |
gcagaagcaa |
130 |
Q |
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||| |||||| |
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| T |
27662867 |
gcaaaagcaa |
27662876 |
T |
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