View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_78 (Length: 251)
Name: NF11809_low_78
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 47714536 - 47714776
Alignment:
| Q |
1 |
tcttttcgataaaaagactcatttaattacattttgtttgataatgacttgtccaaaattacaactctatttttcaattttgannnnnnnnnaaaagagt |
100 |
Q |
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| T |
47714536 |
tcttttcgataaaaagactcatttaattacattttgtttgataatgacttgtccaaaattacaactctatttttcaattttgatttttttt-aaaagagt |
47714634 |
T |
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| Q |
101 |
aaaattaagttttttgtccnnnnnnnggtgttggttgctaaaatactcctttatgaaaaagtatggttatatgtataaacatacacatgactatatccaa |
200 |
Q |
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| T |
47714635 |
aaaattaagttttttgtccaaaaaaaggtgttggttgctaaaatactcctttatgaaaaagtatggttatatgtataaacatacacaggactatatccaa |
47714734 |
T |
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| Q |
201 |
attcacaatgatccactatagcccagctgccctgccctttgc |
242 |
Q |
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| T |
47714735 |
attcacaatgatccactatagcccagctgccctgccctttgc |
47714776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 47721892 - 47721974
Alignment:
| Q |
1 |
tcttttcgataaaaagactcatttaattacattttgtttgataatgacttgtccaaaattacaactctatttttcaattttga |
83 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||||||||| |
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| T |
47721892 |
tcttttggataaaaagacccatttaattacattttgtttgataatgccttgtcgaaaattacaactttatctttcaattttga |
47721974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 47728884 - 47728966
Alignment:
| Q |
1 |
tcttttcgataaaaagactcatttaattacattttgtttgataatgacttgtccaaaattacaactctatttttcaattttga |
83 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||||||||| |
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| T |
47728884 |
tcttttggataaaaagacccatttaattacattttgtttgataatgccttgtcgaaaattacaactttatctttcaattttga |
47728966 |
T |
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