View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_79 (Length: 251)
Name: NF11809_low_79
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_79 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 14270905 - 14271128
Alignment:
| Q |
14 |
agagggagtgcaaaaacaaggaatcaagagaagaaagaagaagcctctgaggacatggagataggaaaatgaaccttaaccattgaagaatgaggtttga |
113 |
Q |
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| T |
14270905 |
agagggagagcaaaaacaaggaatcaagagaagaaagaagaagcctctgaggacatggagatcggaaaatgaaccttaaccattgaagaatgaggtttga |
14271004 |
T |
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| Q |
114 |
tgaatgtataggtaaaagggtgcatgaaggagaagttagccatgatgaagtagaagacatggttaaaagattataacgtgatgataattaatatggtttc |
213 |
Q |
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| T |
14271005 |
tgaatgtataggtaaaagggtgcatgaaggagaagttagccatgatgaagtagaagacatggttaaaagattataacgtgatgataattaatatggtttc |
14271104 |
T |
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| Q |
214 |
atgttatatgttgcgtaaaatatg |
237 |
Q |
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| T |
14271105 |
atgttatatgttgtgtgaaatatg |
14271128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 14283681 - 14283849
Alignment:
| Q |
14 |
agagggagtgcaaaaacaaggaatcaagagaagaaagaagaagcctctgaggacatggagataggaaaatgaaccttaaccattgaagaatga-----gg |
108 |
Q |
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| T |
14283681 |
agagggagagcaaaaacaaggaatcaagagcagaaagaagaagtctctgaggacaaggagataggaaaatgaaccttaaccattgaagtatgaattgtgg |
14283780 |
T |
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| Q |
109 |
ttt-------gatgaatgtataggtaaaagggtgcatgaaggagaagttagccatgatgaagtagaaga |
170 |
Q |
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| T |
14283781 |
tgtagaggaagatgaatgtataggtaaaagggtgcatgaaggagaagttagccatgcagaagaagaaga |
14283849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 14305439 - 14305607
Alignment:
| Q |
14 |
agagggagtgcaaaaacaaggaatcaagagaagaaagaagaagcctctgaggacatggagataggaaaatgaaccttaaccattgaagaatga-----gg |
108 |
Q |
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| T |
14305439 |
agagggagagcaaaaacaaggaatcaagagcagaaagtagaagtctctgaggacaaggagataggaaaatgaaccttaaccattgaagaatgaattgtgg |
14305538 |
T |
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| Q |
109 |
ttt-------gatgaatgtataggtaaaagggtgcatgaaggagaagttagccatgatgaagtagaaga |
170 |
Q |
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| T |
14305539 |
tgtagaagaagatgaatgtaaaggtaaaagggtgcatgaaggagaagttagccatgcagaagtagaaga |
14305607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 215
Target Start/End: Original strand, 14321839 - 14322040
Alignment:
| Q |
23 |
gcaaaaacaaggaatcaagagaagaaagaagaagcctctgaggacatggagataggaaaatgaaccttaaccattgaagaatgaggttt----------- |
111 |
Q |
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| T |
14321839 |
gcaaaaacaaggaatcaagagcagaaacaagaagtctctgaggacatggagatagcaaaatgaaccttaaccattgaattatgagttctggtgtagagga |
14321938 |
T |
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| Q |
112 |
-gatgaatgtataggtaaaagggtgcatgaaggagaagttagccatgatgaagtagaagacatggttaaaagattataacgtgatgataattaatatggt |
210 |
Q |
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| T |
14321939 |
agatgaatctacaggtaaaagggtgcatgaaggagaagttagccatgaagaagt---agacattgttaaaagattattatgtgatgaaaactgataaggt |
14322035 |
T |
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| Q |
211 |
ttcat |
215 |
Q |
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||||| |
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| T |
14322036 |
ttcat |
14322040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 25886500 - 25886679
Alignment:
| Q |
14 |
agagggagtgcaaaaacaaggaatcaagagaagaaagaagaagcctctgaggacatggagataggaaaatgaaccttaaccattgaagaatgaggtttg- |
112 |
Q |
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|||||||| ||||||||||||||||||||| |||||| ||||| || |||||||||||||||||||||| || ||||||||||||| ||||| | || |
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| T |
25886500 |
agagggagagcaaaaacaaggaatcaagagcagaaaggagaagtctttgaggacatggagataggaaaagaaaggttaaccattgaagtatgagttgtgg |
25886599 |
T |
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| Q |
113 |
-----------atgaatgtataggtaaaagggtgcatgaaggagaagttagccatgatgaagtagaagacatggttaaaa |
181 |
Q |
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| T |
25886600 |
tgtagaggaagatgaatctataggtaaaagggtgcatgaaggagaagttagccatgaagaagaagaagacatggttaaaa |
25886679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 44350468 - 44350525
Alignment:
| Q |
122 |
taggtaaaagggtgcatgaaggagaagttagccatgatgaagtagaagacatggttaaaag |
182 |
Q |
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| T |
44350468 |
taggtaaaagggtgcatgaaggagaagttagcc---atgaagaagaagacatggttaaaag |
44350525 |
T |
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