View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_86 (Length: 247)
Name: NF11809_low_86
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_86 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 2013988 - 2013886
Alignment:
| Q |
145 |
tgttactttgtactctgcatgcaacttcacaaaactatacaatatttgaacttacatatttaaatacaaaagtggtcggcctctctatataaccaacacc |
244 |
Q |
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| T |
2013988 |
tgttactttgtactctgcatgcaacttcacaaaactatacaatatttgaacttacatatttaaatacaaaagtggtcggcctctctatataaccaacacc |
2013889 |
T |
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| Q |
245 |
tct |
247 |
Q |
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||| |
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| T |
2013888 |
tct |
2013886 |
T |
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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 2014106 - 2014054
Alignment:
| Q |
18 |
cgtttacgattgtgttgaacttcatctgataattataaaaaagacgttgcaga |
70 |
Q |
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| T |
2014106 |
cgtttacgactgtgttgaacttcatctgataattataaaaaagacattgcaga |
2014054 |
T |
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