View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11809_low_88 (Length: 247)

Name: NF11809_low_88
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11809_low_88
NF11809_low_88
[»] chr2 (13 HSPs)
chr2 (5-247)||(8412454-8412696)
chr2 (5-247)||(8434552-8434794)
chr2 (5-247)||(8394753-8394995)
chr2 (5-231)||(8406334-8406560)
chr2 (5-231)||(8395012-8395238)
chr2 (19-247)||(8431496-8431719)
chr2 (76-212)||(8417746-8417882)
chr2 (76-212)||(8375339-8375475)
chr2 (76-212)||(8439628-8439764)
chr2 (100-219)||(8368812-8368931)
chr2 (100-219)||(8400479-8400598)
chr2 (100-219)||(8422056-8422175)
chr2 (83-217)||(8404470-8404604)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-128; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 8412454 - 8412696
Alignment:
Q  5 cagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8412454 cagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgag 8412553  T
Q  105 agtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8412554 agtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaag 8412653  T
Q  205 actgcatagagttgaactgtagcattagaaattgtacaatgct 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  8412654 actgcatagagttgaactgtagcattagaaattgtagaatgct 8412696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 8434552 - 8434794
Alignment:
Q  5 cagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8434552 cagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgag 8434651  T
Q  105 agtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8434652 agtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaag 8434751  T
Q  205 actgcatagagttgaactgtagcattagaaattgtacaatgct 247  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  8434752 actgcatagagttgaactgtagcattagaaattgtagaatgct 8434794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 247
Target Start/End: Complemental strand, 8394995 - 8394753
Alignment:
Q  5 cagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8394995 cagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgag 8394896  T
Q  105 agtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8394895 agtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaag 8394796  T
Q  205 actgcatagagttgaactgtagcattagaaattgtacaatgct 247  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  8394795 actgcatagagttgaactgtagcattagaatttgtagaatgct 8394753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 8406334 - 8406560
Alignment:
Q  5 cagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8406334 cagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgag 8406433  T
Q  105 agtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8406434 agtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaag 8406533  T
Q  205 actgcatagagttgaactgtagcatta 231  Q
    |||||||||||||||||||||||||||    
T  8406534 actgcatagagttgaactgtagcatta 8406560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 8395238 - 8395012
Alignment:
Q  5 cagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  8395238 cagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaactccagacatggttgtagcagtgag 8395139  T
Q  105 agtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaag 204  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8395138 agtaatcatttttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaag 8395039  T
Q  205 actgcatagagttgaactgtagcatta 231  Q
    |||||||||||||||||||||||||||    
T  8395038 actgcatagagttgaactgtagcatta 8395012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 8431496 - 8431719
Alignment:
Q  19 agagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatattta 118  Q
    |||||||| || ||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||| ||||    
T  8431496 agagcagaagatagtttcagagccaaaagtggtgcaacttccccacttgtgacagctgcaacaccagacatagtcttagcagtgagagtaatcatgttta 8431595  T
Q  119 ttgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagcttccaagactgcatagagttg 218  Q
    ||||||| || ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||| || ||||  ||||||||    
T  8431596 ttgagttcaaaagaagattattccagttgttac---gttcgccaatgttgtgatgcatttctattctgtctgatacagcttctaaaactg--tagagttg 8431690  T
Q  219 aactgtagcattagaaattgtacaatgct 247  Q
    || ||| || |||||| ||||| ||||||    
T  8431691 aattgtggctttagaatttgtagaatgct 8431719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 212
Target Start/End: Original strand, 8417746 - 8417882
Alignment:
Q  76 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca 175  Q
    |||| ||||||||||||||||||||||||||||||||| || || || || || |||||| | ||||| ||||||||| |||| | ||||||||||||||    
T  8417746 gcaagaccagacatggttgtagcagtgagagtaatcatgttgatggaattcaagagaagagtgttccaattgttacgtagttcacaaatgttgtgatgca 8417845  T
Q  176 tttctattctgtctaatacagcttccaagactgcata 212  Q
    |||| ||||||||  | ||| ||||||||||||||||    
T  8417846 tttcaattctgtcagaaacaacttccaagactgcata 8417882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 212
Target Start/End: Complemental strand, 8375475 - 8375339
Alignment:
Q  76 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca 175  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| |||||||| |||||||||||||| |||||||    
T  8375475 gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgttacgctgttcgccaatgttttgatgca 8375376  T
Q  176 tttctattctgtctaatacagcttccaagactgcata 212  Q
    |||| | ||| ||  | || |||||||||| ||||||    
T  8375375 tttcaactctatcagaaactgcttccaagattgcata 8375339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 76 - 212
Target Start/End: Original strand, 8439628 - 8439764
Alignment:
Q  76 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca 175  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| ||| |||| |||||||||||||| |||||||    
T  8439628 gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgctacgctgttcgccaatgttttgatgca 8439727  T
Q  176 tttctattctgtctaatacagcttccaagactgcata 212  Q
    |||| | ||| ||  | || |||||||||| ||||||    
T  8439728 tttcaactctatcagaaactgcttccaagattgcata 8439764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 8368812 - 8368931
Alignment:
Q  100 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagctt 199  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| ||||||||||||||||||||  |||||| ||    
T  8368812 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 8368911  T
Q  200 ccaagactgcatagagttga 219  Q
    | |  | |||||||||||||    
T  8368912 caagaattgcatagagttga 8368931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 8400598 - 8400479
Alignment:
Q  100 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagctt 199  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| ||||||||||||||||||||  |||||| ||    
T  8400598 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 8400499  T
Q  200 ccaagactgcatagagttga 219  Q
    | |  | |||||||||||||    
T  8400498 caagaattgcatagagttga 8400479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 8422175 - 8422056
Alignment:
Q  100 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctaatacagctt 199  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| ||||||||||||||||||||  |||||| ||    
T  8422175 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 8422076  T
Q  200 ccaagactgcatagagttga 219  Q
    | |  | |||||||||||||    
T  8422075 caagaattgcatagagttga 8422056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 217
Target Start/End: Original strand, 8404470 - 8404604
Alignment:
Q  83 cagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctat 182  Q
    ||||||| |||| ||| ||||| || ||||| || || |||||||||| |||  | ||||| |||| ||||||||  || | ||| | ||||||||| ||    
T  8404470 cagacattgttgaagctgtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcacgttgttgtcctaagtttttatgcatttcaat 8404569  T
Q  183 tctgtctaatacagcttccaagactgcatagagtt 217  Q
    ||||||| ||||||| ||| | | |||||||||||    
T  8404570 tctgtctgatacagcctccgaaattgcatagagtt 8404604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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