View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_9 (Length: 579)
Name: NF11809_low_9
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Original strand, 7754036 - 7754598
Alignment:
| Q |
1 |
taagcccaataatctactttttcttgttttgggggatgaagcatcattccttctactttagtacttccctaaagaaaatacatgnnnnnnnnnnnntaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7754036 |
taagcccaataatctactttttcttgttttgggggatgaagcatcattccttctactttagtacttccctaaagaaaatacatgaaaaataaaaaataca |
7754135 |
T |
|
| Q |
101 |
ttaagaacaaaattcttaccaatagaacttagtacatgccaaagttcaaaaataaaaaggtctattaagaaagtaaaaatgatataattcttaccaaatt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7754136 |
ttaagaacaaaattcttaccaatagaacttagtacatgccaaagttcaaaaataaaaaggtctattaagaaagtaaagatgatataattcttaccaaatt |
7754235 |
T |
|
| Q |
201 |
tcctttcagtacatcaagaacatctttatgagaccacaatctgctacgttcaccagggtttgatgttgattctttccgtacaatctctctacccatgtct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7754236 |
tcctttcagtacatcaagaacatctttatgagaccacaatctgctacgttcaccagggtttgatgttgattctttccgtacaatctctctacccatgtct |
7754335 |
T |
|
| Q |
301 |
tgtattaaatcatgcatttctatacaaccattttcatcaacagttaggagacatttactaacaaatactcgtataactgggaaaaaatcacaagcttctt |
400 |
Q |
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||||||| ||||||||||| || ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| | ||||||||||| ||| |
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| T |
7754336 |
tgtattagatcatgcatttgtagcaaaccattttcatcaacagttatgagacatttactattaaacgctcgtataactgggtagaaatcacaagcgtcta |
7754435 |
T |
|
| Q |
401 |
gtatccttttaacataatcccatctttcccctttgaaaaaacaagcaatgtccagaaaagctttttgttccaagtcagataggccattgtagctgatttc |
500 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||| || ||||| |||||| ||| || ||||||||||||||||| |||||||||||||| |
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| T |
7754436 |
gtatccttttagcataatcccatctttcccctttgaagaaacacgcgatgtctagaaaaattttctggtccaagtcagataggcctttgtagctgatttc |
7754535 |
T |
|
| Q |
501 |
caatacaccctgaatctcagcatctggaacctttctatatctctgcaattcaatatccgattc |
563 |
Q |
| |
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|| |||||| ||||||||||||||||| |||||||||||| |||| | |||||||||| |||| |
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| T |
7754536 |
cattacaccttgaatctcagcatctgggacctttctatatttctgaagttcaatatcccattc |
7754598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 137 - 573
Target Start/End: Original strand, 7761271 - 7761707
Alignment:
| Q |
137 |
tgccaaagttcaaaaataaaaaggtctattaagaaagtaaaaatgatataattcttaccaaatttcctttcagtacatcaagaacatctttatgagacca |
236 |
Q |
| |
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|||||||||| ||||| | |||||| |||||| |||||||||||||||||||||| || || ||||||||||||||| | |||||||| | ||||||||| |
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| T |
7761271 |
tgccaaagttaaaaaaaagaaaggtatattaacaaagtaaaaatgatataattctcactaagtttcctttcagtacaccgagaacatcgtgatgagacca |
7761370 |
T |
|
| Q |
237 |
caatctgctacgttcaccagggtttgatgttgattctttccgtacaatctctctacccatgtcttgtattaaatcatgcatttctatacaaccattttca |
336 |
Q |
| |
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|||||||| |||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7761371 |
taatctgctgcgttcaccagggtttgatgtcgactccttccgaacaatctctctacccatgtcttgtattaaatcatgcatttctatacaaccattttca |
7761470 |
T |
|
| Q |
337 |
tcaacagttaggagacatttactaacaaatactcgtataactgggaaaaaatcacaagcttcttgtatccttttaacataatcccatctttcccctttga |
436 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7761471 |
tcaacagttaagagacatttactaacaaatactcgtataactgggaaaaaatcacaagcttcttgtatccttttaacataatcccatctttcccctttga |
7761570 |
T |
|
| Q |
437 |
aaaaacaagcaatgtccagaaaagctttttgttccaagtcagataggccattgtagctgatttccaatacaccctgaatctcagcatctggaacctttct |
536 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7761571 |
aaaaacaagcaatgtccagaaaagctttttgttccaagtcagataggccattgtagctgatttccaatacaccctgaatctcagcatctggaacctttct |
7761670 |
T |
|
| Q |
537 |
atatctctgcaattcaatatccgattcctctctgctc |
573 |
Q |
| |
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|||||||||||||||||||||| |||||||| ||||| |
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| T |
7761671 |
atatctctgcaattcaatatcccattcctctatgctc |
7761707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 187 - 556
Target Start/End: Original strand, 7837738 - 7838107
Alignment:
| Q |
187 |
attcttaccaaatttcctttcagtacatcaagaacatctttatgagaccacaatctgctacgttcaccagggtttgatgttgattctttccgtacaatct |
286 |
Q |
| |
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||||||||||| ||||||||||| ||||||||| |||||||||||||||| || ||||| ||||||||||||||||| || ||||||||||| | ||||| |
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| T |
7837738 |
attcttaccaagtttcctttcagcacatcaagagcatctttatgagaccataacctgctgcgttcaccagggtttgaagtcgattctttccgaataatct |
7837837 |
T |
|
| Q |
287 |
ctctacccatgtcttgtattaaatcatgcatttctatacaaccattttcatcaacagttaggagacatttactaacaaatactcgtataactgggaaaaa |
386 |
Q |
| |
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||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||| | || |
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| T |
7837838 |
ctctacccatgtcttgtattagatcatgcatctctaaacaaccattttcatcaacaattaacagacatttgctaacaaagactcgtataactgggtagaa |
7837937 |
T |
|
| Q |
387 |
atcacaagcttcttgtatccttttaacataatcccatctttcccctttgaaaaaacaagcaatgtccagaaaagctttttgttccaagtcagataggcca |
486 |
Q |
| |
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| ||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |
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| T |
7837938 |
accacaagcatcgagtatccttttaacataatcccatctttcgcctttgaaaaaacaagcaatgtccagaaaaactttctggtccaagtcagataggcct |
7838037 |
T |
|
| Q |
487 |
ttgtagctgatttccaatacaccctgaatctcagcatctggaacctttctatatctctgcaattcaatat |
556 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
7838038 |
ttgtagctgatttccagtacactttgaatctcagcatctggaacctttctatatttctgcagttcaatat |
7838107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 7761157 - 7761237
Alignment:
| Q |
4 |
gcccaataatctactttttcttgttttgggggatgaagcatcattccttctactttagtacttccctaaagaaaatacatg |
84 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||||||||| |||||||| ||| | ||||||||||| | | |||||||| |
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| T |
7761157 |
gcccaatgatctactttctcttgttttgggggatgaagcattattccttcaactgtggtacttccctatacataatacatg |
7761237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 7837587 - 7837653
Alignment:
| Q |
5 |
cccaataatctactttttcttgttttgggggatgaagcatcattccttctactttagtacttcccta |
71 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||||| |
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|
| T |
7837587 |
cccaatgatctactttttcttgttttgggggatgaagcattatgccttcaactgcagtacttcccta |
7837653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 7828538 - 7828478
Alignment:
| Q |
280 |
acaatctctctacccatgtcttgtattaaatcatgcatttctatacaaccattttcatcaa |
340 |
Q |
| |
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|||| |||||||||||| |||||||||| ||||||||| || | || ||||||||||||| |
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|
| T |
7828538 |
acaacctctctacccatatcttgtattagatcatgcatctccaagcagccattttcatcaa |
7828478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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