View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_low_95 (Length: 241)
Name: NF11809_low_95
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_low_95 |
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| [»] scaffold0650 (1 HSPs) |
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Alignment Details
Target: scaffold0650 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 1823 - 2034
Alignment:
| Q |
21 |
tacagttctatcaagtacttattgttttgcaaaccaaacgtatccttaatgtcattcacaagcaaccataataaatgaacagctcatataattaagattc |
120 |
Q |
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| T |
1823 |
tacagttctgtcaaatacttattgttttgcaaatcaaacgcacccttaatgtcattcacaagcaaccataataaatgaacagctcatataattaagattc |
1922 |
T |
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| Q |
121 |
tttaatttcatctcctacgtcaaaccttgccaaactctctagctagcatatagaccaaagaagaaagtatagtcacaaaatccatttcatattagttaat |
220 |
Q |
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| T |
1923 |
ttt-----catctcctacgtcaaaccttgccaaactctctagctagcatatagaccaaagaagaaagtatagtcacaaaatccatttcatattagttaat |
2017 |
T |
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| Q |
221 |
acattaattcttccaac |
237 |
Q |
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| T |
2018 |
acattaattcttccaac |
2034 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 2645258 - 2645299
Alignment:
| Q |
18 |
ttatacagttctatcaagtacttattgttttgcaaaccaaac |
59 |
Q |
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| T |
2645258 |
ttatactgttctatcaagtacttgttgttttgcaaaccaaac |
2645299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 50540271 - 50540230
Alignment:
| Q |
18 |
ttatacagttctatcaagtacttattgttttgcaaaccaaac |
59 |
Q |
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| T |
50540271 |
ttatactgttctgtcaagtacttactgttttgcaaaccaaac |
50540230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 3964201 - 3964161
Alignment:
| Q |
25 |
gttctatcaagtacttattgttttgcaaaccaaacgtatcc |
65 |
Q |
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| T |
3964201 |
gttctatcaagtacttactgttttgcaaatcaaacgcatcc |
3964161 |
T |
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