View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1180_high_2 (Length: 800)
Name: NF1180_high_2
Description: NF1180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1180_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 301 - 794
Target Start/End: Complemental strand, 43380718 - 43380236
Alignment:
| Q |
301 |
ttgtgataaaaaagacacatactagaagaatttcaaatgatatttaaaggcagaaatgggtacccttcaaattcttgttcgaaaatggccattgtttttg |
400 |
Q |
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| T |
43380718 |
ttgtgataaaaaagacacatactagaagaatttcaaatgatatttaaaggcagaaatgggtacccttcaaattcttgttcgataatggccattgtttttg |
43380619 |
T |
|
| Q |
401 |
caagtctactggcaacatccttaacactttcccctccttctggcccaaaaagaggatctttctcatctatttcccaaatatgatcatactgtttgttgat |
500 |
Q |
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| T |
43380618 |
caagtctactggcaacatccttaacactttcccctccttctggcccaacaagaggatctttctcatctatttcccaaatatgatcatactatt----gat |
43380523 |
T |
|
| Q |
501 |
nnnnnnntgaaaagagaaaatgagtttaacaaactacttttcatttgttggaaactgattctctgtcttaaaagtcatgacacaaattgagccatttatg |
600 |
Q |
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| T |
43380522 |
aaaaaaatgaaaagagaaaatgagtttaacaaact------catgactta-aaactgattctctgtcttaaaactcatgacacaaattgagccatttatg |
43380430 |
T |
|
| Q |
601 |
aatgagttaccttatcatgagataaaagctcaaaggaaggaccaaagtagcgctctcgaagatcttggatgaccttacactgagaggcatgaaaaggaat |
700 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43380429 |
aatgagttaccttatcatgagataaaagctcaaaggaaggaccaaagtagcgctctcgaagatcttggatgaccttacaatgagaggcatgaaaaggaat |
43380330 |
T |
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| Q |
701 |
attcaatgctgttgcaacaacattagcagtgtgggctgttcttgaaaagggggagtagcaaatgcgaacattagcaagtggtatattattggac |
794 |
Q |
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| T |
43380329 |
attcaatgctgttgcaacaacattagcagtgtgggttgttcttgaaaagggggagtagcaaatgcgaacattagcaagtggtatattattggac |
43380236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 30 - 304
Target Start/End: Complemental strand, 43381038 - 43380764
Alignment:
| Q |
30 |
cagagcatattggcgatgcttggacaagattggcgccacctgaactgcctctaatattgaagctaagtcatcagaagtgggttccttatgtttcttagct |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43381038 |
cagagcatattggcgatgcttggacaagattggcgccacctgaactgcctctaatattgaagctaagtcattagaagtgggttccttatgtttcttagct |
43380939 |
T |
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| Q |
130 |
gcatgcagaattgtttgcaagatctgcaggggatccccatggctgacaaccaaaatcgcacatctgcatgatgtggaatggaatgagattgattgatact |
229 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43380938 |
gcatgaagaattgtttgcaagatctgcaggggatccccatggctgacaaccaaaatcgcacatctgaatgatgtggaatggaatgagattgattgatact |
43380839 |
T |
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| Q |
230 |
agatcacaagccaaaataaaatattcaccaactgaaattttgaaaagtatttgcatgttacggtgaatcttttgt |
304 |
Q |
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|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43380838 |
agatcacaagacaaaataaaatattgactaactgaaattttgaaaagtatttgcatgttacagtgaatcttttgt |
43380764 |
T |
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