View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1180_high_5 (Length: 333)
Name: NF1180_high_5
Description: NF1180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1180_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 31 - 253
Target Start/End: Original strand, 33717199 - 33717418
Alignment:
| Q |
31 |
agataatagattacacagtttgctcttgcaaaaatagatcacacaatttagtgtaatagaaatcatattaaatttcga-ccgaaaaaaacatattaaata |
129 |
Q |
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| T |
33717199 |
agataatagattacacaatttgctcttgcaaaaatagatcacacaatttagtgtgatagaaaacatattaaatttcgatccaaaaaaaacatattaaaaa |
33717298 |
T |
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| Q |
130 |
gatnnnnnnnnntttataattatttaagaacattcggattagatgataaggaatctcttacaattcaaccaaatgttatgggtttgaatccagtccacat |
229 |
Q |
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| T |
33717299 |
aaaaaaaac----ttataattattcaagaacattcggattagatgataaggaatctcttacaattcaaccaaatgttatgggtttgaatccagtccacat |
33717394 |
T |
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| Q |
230 |
gcaacaatgttaacctgtttgaga |
253 |
Q |
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|||||||||||||||| ||||||| |
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| T |
33717395 |
gcaacaatgttaacctttttgaga |
33717418 |
T |
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