View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1180_low_10 (Length: 252)

Name: NF1180_low_10
Description: NF1180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1180_low_10
NF1180_low_10
[»] chr5 (19 HSPs)
chr5 (45-241)||(5472289-5472486)
chr5 (18-113)||(37495056-37495151)
chr5 (18-111)||(13038547-13038640)
chr5 (38-103)||(43442222-43442288)
chr5 (18-103)||(11465000-11465085)
chr5 (38-94)||(8780506-8780562)
chr5 (15-111)||(31288036-31288132)
chr5 (18-69)||(30485881-30485932)
chr5 (36-79)||(38990598-38990641)
chr5 (18-104)||(12398541-12398627)
chr5 (18-68)||(13108542-13108592)
chr5 (18-111)||(8484754-8484847)
chr5 (18-111)||(11926595-11926688)
chr5 (38-75)||(25627112-25627149)
chr5 (18-111)||(32059533-32059626)
chr5 (18-111)||(33709594-33709687)
chr5 (52-104)||(16172982-16173034)
chr5 (49-109)||(24255461-24255521)
chr5 (46-94)||(36895453-36895501)
[»] chr8 (26 HSPs)
chr8 (19-111)||(13525569-13525660)
chr8 (19-111)||(13615104-13615195)
chr8 (38-104)||(22200673-22200739)
chr8 (34-104)||(30482560-30482630)
chr8 (18-111)||(41070776-41070868)
chr8 (19-110)||(28964049-28964140)
chr8 (18-111)||(3734716-3734809)
chr8 (18-111)||(27746428-27746521)
chr8 (30-111)||(33585732-33585813)
chr8 (38-106)||(5202203-5202271)
chr8 (38-114)||(32206249-32206325)
chr8 (27-75)||(35690037-35690085)
chr8 (38-88)||(18540339-18540390)
chr8 (25-68)||(25248407-25248450)
chr8 (18-69)||(32879336-32879387)
chr8 (36-110)||(13580014-13580088)
chr8 (38-104)||(16317636-16317702)
chr8 (38-75)||(3174789-3174826)
chr8 (54-111)||(11714948-11715005)
chr8 (36-109)||(12312863-12312936)
chr8 (18-111)||(34237748-34237841)
chr8 (18-105)||(2166720-2166805)
chr8 (25-69)||(4698823-4698867)
chr8 (38-110)||(11956169-11956241)
chr8 (27-75)||(23361622-23361670)
chr8 (52-103)||(36205221-36205273)
[»] chr3 (23 HSPs)
chr3 (18-114)||(51532797-51532893)
chr3 (34-100)||(16140319-16140385)
chr3 (38-111)||(4252509-4252582)
chr3 (38-131)||(55371398-55371491)
chr3 (18-110)||(53234003-53234095)
chr3 (18-69)||(21362996-21363047)
chr3 (19-110)||(27887440-27887531)
chr3 (15-69)||(8958126-8958180)
chr3 (56-114)||(27811999-27812057)
chr3 (18-111)||(4462644-4462737)
chr3 (18-111)||(40133542-40133635)
chr3 (18-69)||(2511390-2511441)
chr3 (52-103)||(10682942-10682993)
chr3 (18-104)||(49167074-49167160)
chr3 (38-103)||(4222167-4222233)
chr3 (18-111)||(7470308-7470401)
chr3 (18-111)||(15566592-15566685)
chr3 (18-111)||(26108303-26108396)
chr3 (18-111)||(30807246-30807339)
chr3 (18-111)||(35492922-35493015)
chr3 (61-94)||(48991675-48991708)
chr3 (25-69)||(39041952-39041996)
chr3 (30-106)||(49029920-49029996)
[»] scaffold0020 (1 HSPs)
scaffold0020 (18-105)||(166047-166134)
[»] chr7 (25 HSPs)
chr7 (15-94)||(42814896-42814975)
chr7 (38-103)||(7721395-7721461)
chr7 (14-111)||(28089831-28089928)
chr7 (38-94)||(28647001-28647057)
chr7 (15-69)||(22703543-22703597)
chr7 (18-111)||(2751286-2751379)
chr7 (38-111)||(22696335-22696408)
chr7 (27-75)||(9183164-9183212)
chr7 (18-110)||(11997865-11997957)
chr7 (20-111)||(9718082-9718173)
chr7 (38-72)||(46572194-46572228)
chr7 (38-104)||(47541406-47541472)
chr7 (32-110)||(48199183-48199260)
chr7 (34-110)||(3950897-3950974)
chr7 (18-111)||(7175955-7176048)
chr7 (18-111)||(7275292-7275385)
chr7 (18-111)||(17197043-17197136)
chr7 (18-111)||(22119903-22119996)
chr7 (38-75)||(33222425-33222462)
chr7 (38-98)||(37162334-37162395)
chr7 (18-111)||(40543003-40543096)
chr7 (38-75)||(47824584-47824621)
chr7 (27-75)||(15137608-15137656)
chr7 (38-110)||(40332115-40332187)
chr7 (27-75)||(42712013-42712061)
[»] chr4 (27 HSPs)
chr4 (19-110)||(34835541-34835632)
chr4 (18-111)||(40058945-40059038)
chr4 (18-114)||(33992634-33992730)
chr4 (16-104)||(49287876-49287964)
chr4 (18-69)||(13873388-13873439)
chr4 (34-104)||(25414195-25414265)
chr4 (34-104)||(41621705-41621775)
chr4 (18-111)||(25852225-25852318)
chr4 (18-111)||(34844851-34844944)
chr4 (27-75)||(7949427-7949475)
chr4 (38-110)||(9646329-9646401)
chr4 (18-69)||(5609295-5609346)
chr4 (20-111)||(13584349-13584440)
chr4 (18-128)||(22625163-22625273)
chr4 (36-74)||(39343522-39343560)
chr4 (52-110)||(40252310-40252368)
chr4 (48-98)||(41085050-41085100)
chr4 (54-111)||(12710190-12710247)
chr4 (38-71)||(13015486-13015519)
chr4 (55-104)||(37317404-37317453)
chr4 (35-104)||(43352434-43352503)
chr4 (18-111)||(52983630-52983723)
chr4 (28-104)||(21344842-21344918)
chr4 (38-74)||(23333997-23334033)
chr4 (28-104)||(29195120-29195196)
chr4 (32-76)||(37172816-37172860)
chr4 (18-110)||(43719158-43719250)
[»] chr6 (17 HSPs)
chr6 (18-111)||(28672078-28672171)
chr6 (45-104)||(17149576-17149635)
chr6 (34-104)||(3869721-3869791)
chr6 (36-110)||(3907553-3907627)
chr6 (18-111)||(11448882-11448975)
chr6 (18-111)||(15360191-15360284)
chr6 (31-76)||(24256799-24256844)
chr6 (34-110)||(33718567-33718643)
chr6 (31-91)||(6691528-6691588)
chr6 (34-94)||(28741950-28742010)
chr6 (15-110)||(11007177-11007272)
chr6 (28-69)||(9626093-9626134)
chr6 (29-62)||(21004832-21004865)
chr6 (28-104)||(33499492-33499569)
chr6 (38-110)||(9208264-9208336)
chr6 (18-110)||(9843950-9844042)
chr6 (38-90)||(10007212-10007264)
[»] chr2 (16 HSPs)
chr2 (20-69)||(5608129-5608178)
chr2 (38-114)||(40591191-40591267)
chr2 (40-111)||(8192466-8192537)
chr2 (18-104)||(5394035-5394121)
chr2 (19-111)||(32845102-32845194)
chr2 (25-109)||(41314005-41314089)
chr2 (27-88)||(1435105-1435166)
chr2 (38-104)||(4590907-4590973)
chr2 (16-62)||(35797522-35797567)
chr2 (20-69)||(25293219-25293268)
chr2 (38-103)||(28194246-28194311)
chr2 (18-111)||(30466923-30467016)
chr2 (52-104)||(31681074-31681127)
chr2 (38-75)||(35203367-35203404)
chr2 (19-111)||(14946790-14946882)
chr2 (25-69)||(36242412-36242456)
[»] chr1 (26 HSPs)
chr1 (14-131)||(18646844-18646961)
chr1 (38-114)||(1138587-1138663)
chr1 (18-94)||(1378926-1379002)
chr1 (18-69)||(8254845-8254896)
chr1 (37-104)||(17447292-17447359)
chr1 (18-132)||(8077637-8077751)
chr1 (1-69)||(168254-168321)
chr1 (28-104)||(6127961-6128037)
chr1 (38-93)||(1378774-1378829)
chr1 (18-69)||(9500448-9500499)
chr1 (18-69)||(15059495-15059546)
chr1 (38-69)||(17745240-17745271)
chr1 (1-100)||(25237066-25237164)
chr1 (18-105)||(45859136-45859223)
chr1 (16-111)||(46113493-46113588)
chr1 (38-114)||(1486428-1486502)
chr1 (38-98)||(2799893-2799954)
chr1 (18-111)||(4621330-4621423)
chr1 (38-75)||(6650650-6650687)
chr1 (38-111)||(10059066-10059139)
chr1 (18-111)||(24674404-24674497)
chr1 (38-111)||(32729556-32729629)
chr1 (18-111)||(46607821-46607914)
chr1 (68-104)||(6471690-6471726)
chr1 (25-113)||(7946853-7946941)
chr1 (38-114)||(24216986-24217062)
[»] scaffold0576 (1 HSPs)
scaffold0576 (18-111)||(5175-5268)
[»] scaffold0074 (1 HSPs)
scaffold0074 (38-69)||(45743-45774)
[»] scaffold0140 (1 HSPs)
scaffold0140 (48-90)||(29506-29548)
[»] scaffold0049 (1 HSPs)
scaffold0049 (25-110)||(66774-66859)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 45 - 241
Target Start/End: Complemental strand, 5472486 - 5472289
Alignment:
Q  45 caccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactaggtcagcctcgaattggttaaaaaagacaacatta 144  Q
    |||||||||||||||||||| | |||||  || ||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||    
T  5472486 caccagagagaatcgaacattaaactttaggaaaagtacactccaagatctcaaaccaactaataggtcagccccaaattggttaaaaaagacaacatta 5472387  T
Q  145 tcaaataaaaagca-nnnnnnnncttacaattatatattctagtagtgcattattggttatgatattttgtctctcaaattaatgagatcacagtata 241  Q
    ||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5472386 tcaaataaaaagcatttttttttcttacaattatatattctagtagtgcattattggttatgatattttgtctctcaaattaatgagatcacagtata 5472289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 37495151 - 37495056
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactaggtc 113  Q
    |||||| |||||||| |||||||||| |||||||| ||||||||| |||||| |   ||| || | ||||||||||||||| ||||| ||||||||    
T  37495151 tgtatggacttagcccaccaaaattggcaccagagggaatcgaacctgagacctctggaggagcaaactccaagatctcaagccaaccactaggtc 37495056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 13038547 - 13038640
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    ||||||||||||||| | |||||||| |||||||| ||||||||| |||||| |   ||| || | ||||||||||| ||||||||| ||||||    
T  13038547 tgtatgaacttagcccatcaaaattggcaccagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaaaccaaccactagg 13038640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 43442288 - 43442222
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttga-gagaagtacactccaagatctcaaaccaa 103  Q
    ||||||||| ||||||||||||||| |||||| |||| ||| || ||||||| ||||||||||||||    
T  43442288 aaattgacaacagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaaaccaa 43442222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 11465000 - 11465085
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaa 103  Q
    ||||||||||||||| |||||||||| ||||||||  |||||||| |||||| ||  ||| || | |||||||||| |||| ||||    
T  11465000 tgtatgaacttagcccaccaaaattggcaccagaggaaatcgaacctgagacatttggaggagcaaactccaagatttcaagccaa 11465085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 8780562 - 8780506
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatc 94  Q
    |||||||||| ||||| |||||||| |||||| ||||||| || |||||||||||||    
T  8780562 aaattgacacaagagacaatcgaacctgagaccttgagaggagcacactccaagatc 8780506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 31288036 - 31288132
Alignment:
Q  15 ctttgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    ||||||||| ||||| || ||| |||||| ||||| || |||||||||||||||| ||  ||| || | ||||||||||| ||| ||||| ||||||    
T  31288036 ctttgtatggacttaacccaccgaaattggcaccaaagggaatcgaacatgagacctttggaggagcaaactccaagatcccaagccaaccactagg 31288132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 30485932 - 30485881
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    |||||| |||||||| ||| ||||||||||||||| ||||||||| ||||||    
T  30485932 tgtatggacttagcccaccgaaattgacaccagagtgaatcgaacctgagac 30485881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 38990598 - 38990641
Alignment:
Q  36 caaaattgacaccagagagaatcgaacatgagactttgagagaa 79  Q
    ||||||||||||| |||||||||||||||||||  |||||||||    
T  38990598 caaaattgacaccggagagaatcgaacatgagatcttgagagaa 38990641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 12398541 - 12398627
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    ||||||||||||| | ||| |||||||||||| || ||||||||| |||||| ||  ||| || | ||||||||||| ||| |||||    
T  12398541 tgtatgaacttaggccaccgaaattgacaccatagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaac 12398627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 13108542 - 13108592
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgaga 68  Q
    ||||||||||||||| | |||||||| |||||||| ||||||||| |||||    
T  13108542 tgtatgaacttagcccatcaaaattggcaccagagggaatcgaacctgaga 13108592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 8484754 - 8484847
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    ||||||||||||||| ||| |||||| |||||||| ||||| ||| |||||| |   ||| || | ||||||||||| ||| ||||| ||||||    
T  8484754 tgtatgaacttagcccaccgaaattggcaccagagggaatcaaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagg 8484847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 11926595 - 11926688
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||| ||| |||||| |   ||| || | ||||||||||| ||||||||| ||||||    
T  11926595 tgtatggacttagcccaccgaaattggcaccagagggaatctaacctgagacctctggaggagcaaactccaagatcccaaaccaaccactagg 11926688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 25627149 - 25627112
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgag 75  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  25627149 aaattgacaccagagagaatcgaacctgagaccttgag 25627112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 32059533 - 32059626
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||  ||||||||| |||||| ||  ||| || | ||||||||||| ||| ||||| ||||||    
T  32059533 tgtatggacttagcccaccgaaattggcaccagaaggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactagg 32059626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 33709594 - 33709687
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| |   ||| || | ||||||||||| ||| ||||| ||||||    
T  33709594 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacttgagacctctggaggagcaaactccaagatcccaagccaaccactagg 33709687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 16172982 - 16173034
Alignment:
Q  52 gagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    ||||||||||| |||||| ||||||| || |||||||||| |||||| |||||    
T  16172982 gagaatcgaacctgagaccttgagaggagcacactccaaggtctcaagccaac 16173034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 24255521 - 24255461
Alignment:
Q  49 agagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactacta 109  Q
    ||||||||||||| ||| || |||||||| | |||||||||| ||||||| ||||| ||||    
T  24255521 agagagaatcgaatatgtgattttgagaggaatacactccaacatctcaagccaaccacta 24255461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 36895501 - 36895453
Alignment:
Q  46 accagagagaatcgaacatgagactttgagagaagtacactccaagatc 94  Q
    ||||||| ||||||||||||| || ||||||| || |||||||||||||    
T  36895501 accagagggaatcgaacatgaaaccttgagaggagcacactccaagatc 36895453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 13525660 - 13525569
Alignment:
Q  19 gtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    ||||| |||||||| | ||| |||| |||||||| |||||||||||||||| |||||||||||||| || || ||||||||||||||||||||    
T  13525660 gtatggacttagcccatcaagattggcaccagag-gaatcgaacatgagaccttgagagaagtacattctaaaatctcaaaccaactactagg 13525569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 13615195 - 13615104
Alignment:
Q  19 gtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    ||||| |||||||| | ||| |||| |||||||| |||||||||||||||| |||||||||||||| || || ||||||||||||||||||||    
T  13615195 gtatggacttagcccatcaagattggcaccagag-gaatcgaacatgagaccttgagagaagtacattctaaaatctcaaaccaactactagg 13615104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 22200673 - 22200739
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    |||||| ||| |||| ||||||||| ||||||||||||||||||| ||||||||||| |||||||||    
T  22200673 aaattggcactagagggaatcgaacctgagactttgagagaagtaaactccaagatcccaaaccaac 22200739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 30482630 - 30482560
Alignment:
Q  34 accaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    |||||| |||||| |||||||||||| || |||||| |||||||||| ||| || ||||||||||||||||    
T  30482630 accaaatttgacatcagagagaatcggacctgagacattgagagaagcacattcgaagatctcaaaccaac 30482560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 41070868 - 41070776
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    ||||||||||| ||| ||| |||||||||||| || ||||||||| |||||| ||||||| || ||||||||||||| |||  |||| ||||||    
T  41070868 tgtatgaactt-gcccaccgaaattgacaccaaagggaatcgaacttgagaccttgagagtagcacactccaagatcccaagtcaaccactagg 41070776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 28964140 - 28964049
Alignment:
Q  19 gtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    ||||| |||||||| ||| |||||| |||||||  ||||||||||||| || || |||| || | |||| |||||||||||||||| |||||    
T  28964140 gtatggacttagcccaccgaaattggcaccagatggaatcgaacatgaaaccttaagaggagcaaactctaagatctcaaaccaaccactag 28964049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 3734716 - 3734809
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| ||  ||| || | ||||||||||| ||| ||||| ||||||    
T  3734716 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactagg 3734809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 27746428 - 27746521
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| ||||| || ||||||||| |||||| ||  ||| || | ||||||||||| ||||||||| ||||||    
T  27746428 tgtatggacttagcccaccgaaattggcaccaaagggaatcgaacctgagacctttggaggagcaaactccaagatcccaaaccaaccactagg 27746521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 33585732 - 33585813
Alignment:
Q  30 gcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    ||||||| ||||| |||  ||||  |||||||| ||| |||||||||| || |||||| |||||||||||||||| ||||||    
T  33585732 gcctaccgaaattaacataagaggaaatcgaacctgaaactttgagaggagcacactctaagatctcaaaccaaccactagg 33585813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 5202203 - 5202271
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaacta 106  Q
    ||||||||| |||||| |||||||| |||||||||||||  || | ||| |||||||| ||||||||||    
T  5202203 aaattgacatcagagaaaatcgaacttgagactttgagatgagcaaacttcaagatcttaaaccaacta 5202271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 32206249 - 32206325
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactaggtca 114  Q
    ||||||||| ||||| |||||||||||||||  ||||||| |  ||| ||||| |||||||||||||  ||||||||    
T  32206249 aaattgacatcagagggaatcgaacatgagatcttgagaggaagacattccaaaatctcaaaccaaccgctaggtca 32206325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 35690037 - 35690085
Alignment:
Q  27 ttagcctaccaaaattgacaccagagagaatcgaacatgagactttgag 75  Q
    |||||||||  ||||||||||||||||||||||||| |||||| |||||    
T  35690037 ttagcctacttaaattgacaccagagagaatcgaacctgagaccttgag 35690085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 18540390 - 18540339
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttga-gagaagtacactcc 88  Q
    |||||| |||||||||||||||||| |||||| |||| ||||||||||||||    
T  18540390 aaattggcaccagagagaatcgaacctgagaccttgaggagaagtacactcc 18540339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 25248450 - 25248407
Alignment:
Q  25 acttagcctaccaaaattgacaccagagagaatcgaacatgaga 68  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||    
T  25248450 acttagcctaccgaaattgacaccagagggaatcgaacctgaga 25248407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 32879387 - 32879336
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    ||||||||||||||| ||| |||||| |||||||| ||||||||| ||||||    
T  32879387 tgtatgaacttagcccaccgaaattggcaccagagggaatcgaacctgagac 32879336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 13580014 - 13580088
Alignment:
Q  36 caaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    |||||||| ||||||||||||||||||||||||  |||| |  | |||| ||||||||| ||| | |||||||||    
T  13580014 caaaattggcaccagagagaatcgaacatgagatattgaaaagattacagtccaagatcccaacctaactactag 13580088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 16317702 - 16317636
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    |||||| |||||||||||||||||||||||||  |||||| || |||||| ||| || ||| |||||    
T  16317702 aaattggcaccagagagaatcgaacatgagacgctgagaggagcacactctaaggtcccaagccaac 16317636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 3174789 - 3174826
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgag 75  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  3174789 aaattgacaccagagagaatcgaacctgagaccttgag 3174826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 11714948 - 11715005
Alignment:
Q  54 gaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    ||||||||| ||| |  |||||||||| | ||||||||||||||||||||| ||||||    
T  11714948 gaatcgaacctgaaatcttgagagaagcaaactccaagatctcaaaccaaccactagg 11715005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 12312936 - 12312863
Alignment:
Q  36 caaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactacta 109  Q
    |||||||| ||||||||  |||||||| ||||| |||||||  || | ||||||||||| |||| |||||||||    
T  12312936 caaaattggcaccagaggaaatcgaacttgagattttgagaagagcaaactccaagatcccaaatcaactacta 12312863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 34237748 - 34237841
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| |   ||| || | ||||||||||| ||| ||||| ||||||    
T  34237748 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagg 34237841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 2166805 - 2166720
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaact 105  Q
    |||||| |||||||||||  |||||| |||  ||| ||||||||| |||||| ||  |||||| | ||||||||||| ||||||||||    
T  2166805 tgtatggacttagcctactgaaattggcac--gagggaatcgaacctgagacctttggagaagcaaactccaagatcccaaaccaact 2166720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 4698823 - 4698867
Alignment:
Q  25 acttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    |||||||| ||| ||||||||||||||| ||||||||| ||||||    
T  4698823 acttagcccaccgaaattgacaccagagggaatcgaacctgagac 4698867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 11956169 - 11956241
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    |||||||||||||||| |||||| | | |||  |||||||||  |||||| ||||||||||| |||| |||||    
T  11956169 aaattgacaccagagaaaatcgagcttaagatattgagagaatcacactctaagatctcaaatcaaccactag 11956241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 23361622 - 23361670
Alignment:
Q  27 ttagcctaccaaaattgacaccagagagaatcgaacatgagactttgag 75  Q
    |||||| ||| |||||||||||||||||||| |||| |||||| |||||    
T  23361622 ttagcccacctaaattgacaccagagagaattgaacctgagaccttgag 23361670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 36205273 - 36205221
Alignment:
Q  52 gagaatcgaacatgagactttga-gagaagtacactccaagatctcaaaccaa 103  Q
    |||||||||||||||||| |||| ||| || ||||||| ||||||||||||||    
T  36205273 gagaatcgaacatgagaccttgaggaggagcacactcccagatctcaaaccaa 36205221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 51532893 - 51532797
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactaggtca 114  Q
    |||||| |||||||| ||| |||||| ||  ||||||||||||||||||||| ||  |||||| | ||||||| ||||||||||||||| |||||||    
T  51532893 tgtatggacttagcccaccgaaattggcattagagagaatcgaacatgagacctttggagaagcaaactccaaaatctcaaaccaactaataggtca 51532797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 16140385 - 16140319
Alignment:
Q  34 accaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaac 100  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| || |  |||||||||| |||||    
T  16140385 accaaaattgacactagagaaaatcgaacatgagactttgagaggagcaagctccaagatcccaaac 16140319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 4252509 - 4252582
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||||| ||| |||||| ||||||| || ||||||||||||||||| ||||| ||||||    
T  4252509 aaattggcaccagagggaatcaaacttgagaccttgagaggagcacactccaagatctcaagccaaccactagg 4252582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 55371398 - 55371491
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactaggtcagcctcgaattggttaaa 131  Q
    |||||| ||||| || |||||||||||||||| |||||||||| | ||||||| ||| ||| ||||| |||||| || |||| ||| |||||||    
T  55371398 aaattggcaccaaagggaatcgaacatgagaccttgagagaagcatactccaaaatcgcaagccaaccactaggccaacctcaaataggttaaa 55371491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 53234003 - 53234095
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    |||||| |||||||| ||| |||||| |||||||||||||||||| ||||||||   ||| || | ||||||||||| ||| ||||| |||||    
T  53234003 tgtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagacttctggaggagcaaactccaagatcccaagccaaccactag 53234095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 21363047 - 21362996
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    |||||| |||||||||||| ||||||||||||||| ||||||||| ||||||    
T  21363047 tgtatggacttagcctaccgaaattgacaccagagggaatcgaacctgagac 21362996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 27887531 - 27887440
Alignment:
Q  19 gtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    ||||| |||||||| |||||||||||||  ||   ||||||||| | |||| |||||||||| ||||||||| ||||||| ||||| |||||    
T  27887531 gtatggacttagcccaccaaaattgacataaggaggaatcgaacctaagacattgagagaagcacactccaatatctcaagccaaccactag 27887440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 8958126 - 8958180
Alignment:
Q  15 ctttgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    ||||||||| |||||||| |||||||||||||||||||  |||||||||| ||||    
T  8958126 ctttgtatggacttagcccaccaaaattgacaccagaggaaatcgaacataagac 8958180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 27811999 - 27812057
Alignment:
Q  56 atcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactaggtca 114  Q
    |||||||||||||| |||||||||| ||| ||||| |||||||| |||| |||||||||    
T  27811999 atcgaacatgagaccttgagagaagcacattccaaaatctcaaatcaaccactaggtca 27812057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 4462737 - 4462644
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    ||||||||||||||| | | ||||||   |||||| |||||||||||||||||||   || || | ||||||||||||||| ||||| ||||||    
T  4462737 tgtatgaacttagcccatcgaaattggtgccagagggaatcgaacatgagacttttgaagtagcaaactccaagatctcaagccaaccactagg 4462644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 40133542 - 40133635
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| ||||||||||||||| ||||||||| |||||| ||  ||| || | ||||||| ||| ||| ||||| ||||||    
T  40133542 tgtatggacttagcccaccgaaattgacaccagagggaatcgaacctgagacctttggaggagcaaactccaaaatcccaagccaaccactagg 40133635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 2511390 - 2511441
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    ||||||||||||||| ||| |||||| |||||||| ||||||||| ||||||    
T  2511390 tgtatgaacttagcccaccgaaattggcaccagagggaatcgaacctgagac 2511441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 10682942 - 10682993
Alignment:
Q  52 gagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaa 103  Q
    |||||| |||| ||||||||||||||||| |||||||||| |||||| ||||    
T  10682942 gagaattgaacctgagactttgagagaagcacactccaaggtctcaagccaa 10682993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 49167160 - 49167074
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgaga-ctttgagagaagtacactccaagatctcaaaccaac 104  Q
    |||||| |||||| | ||| ||||||||||||||||||||||||| ||| | ||||| ||| || | ||||||||||||||| |||||    
T  49167160 tgtatggacttagtccaccgaaattgacaccagagagaatcgaacctgatatctttg-gaggagcaaactccaagatctcaagccaac 49167074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 4222233 - 4222167
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttga-gagaagtacactccaagatctcaaaccaa 103  Q
    ||||||||||||||||||||||||| | ||||||||| ||| || ||||||| ||||| ||| ||||    
T  4222233 aaattgacaccagagagaatcgaacctaagactttgaggaggagcacactcccagatcccaagccaa 4222167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 7470308 - 7470401
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    ||||||||||||||| ||| |||||| ||  |||| ||||||||| |||||| ||  ||| || | |||||||||||||||  |||| ||||||    
T  7470308 tgtatgaacttagcccaccgaaattggcattagagggaatcgaacctgagacctttggaggagcaaactccaagatctcaagtcaaccactagg 7470401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 15566592 - 15566685
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| ||| |||| ||||||||| |||||| |   ||| || | ||||||||||||||| ||||| ||||||    
T  15566592 tgtatggacttagcccaccgaaattggcactagagggaatcgaacctgagacctctggaggagcaaactccaagatctcaagccaaccactagg 15566685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 26108396 - 26108303
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| |   ||| || | ||||||||||| ||| ||||| ||||||    
T  26108396 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagg 26108303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 30807246 - 30807339
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| |   ||| || | ||||||||||| ||| ||||| ||||||    
T  30807246 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagg 30807339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 35493015 - 35492922
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| |   ||| || | ||||||||||| ||| ||||| ||||||    
T  35493015 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagg 35492922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 48991708 - 48991675
Alignment:
Q  61 acatgagactttgagagaagtacactccaagatc 94  Q
    |||||||||||||||||||| |||||||||||||    
T  48991708 acatgagactttgagagaagcacactccaagatc 48991675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 39041952 - 39041996
Alignment:
Q  25 acttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    |||||||| ||| |||||| |||||||||||||||||| ||||||    
T  39041952 acttagcccaccgaaattggcaccagagagaatcgaacttgagac 39041996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 49029996 - 49029920
Alignment:
Q  30 gcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaacta 106  Q
    |||||||||||||| ||| ||||| |||||||| | | |  || ||| ||||||||| |||||| ||||||||||||    
T  49029996 gcctaccaaaattggcacaagagaaaatcgaacctaaaatcttaagaaaagtacacttcaagatttcaaaccaacta 49029920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 166134 - 166047
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaact 105  Q
    ||||||||||||||| | |||||||||||| | ||| |||||||| | ||||||| | ||||| ||||||||| ||| ||||||||||    
T  166134 tgtatgaacttagcccatcaaaattgacacaaaagataatcgaacctaagactttaaaagaagcacactccaatatcacaaaccaact 166047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 42814975 - 42814896
Alignment:
Q  15 ctttgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatc 94  Q
    ||||||||| |||||||| ||| ||||||||||||||| ||||||||| ||||||||  |||| || | |||||||||||    
T  42814975 ctttgtatggacttagcccaccgaaattgacaccagagggaatcgaacctgagacttcaagaggagcaaactccaagatc 42814896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 7721461 - 7721395
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttga-gagaagtacactccaagatctcaaaccaa 103  Q
    |||||||||||||||||||||||||||||||| |||| ||| |||||||||| || || ||||||||    
T  7721461 aaattgacaccagagagaatcgaacatgagaccttgaggaggagtacactcccaggtcccaaaccaa 7721395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 28089928 - 28089831
Alignment:
Q  14 actttgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||||||| |||||||| ||| ||||||||||||||| | ||||||| |||||| |   ||| || | ||||||||||||||| ||||| ||||||    
T  28089928 actttgtatggacttagcccaccgaaattgacaccagagggtatcgaacctgagacatctggaggagcaaactccaagatctcaagccaaccactagg 28089831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 28647057 - 28647001
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatc 94  Q
    |||||| |||||||| ||||||||| |||||| |||||||||| |||||||||||||    
T  28647057 aaattggcaccagagggaatcgaacctgagaccttgagagaagcacactccaagatc 28647001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 22703597 - 22703543
Alignment:
Q  15 ctttgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    ||||||||| |||||||| ||| ||||||||||||||| ||||||||| ||||||    
T  22703597 ctttgtatggacttagcccaccgaaattgacaccagagggaatcgaacctgagac 22703543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 2751379 - 2751286
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| ||  ||| || | ||||||||||| ||| ||||| ||||||    
T  2751379 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactagg 2751286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 22696408 - 22696335
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||||| ||| |||||| ||||||| || ||||||||||||| |||| |||| ||||||    
T  22696408 aaattggcaccagagggaatcaaacctgagaccttgagaggagcacactccaagatcccaaatcaaccactagg 22696335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 9183164 - 9183212
Alignment:
Q  27 ttagcctaccaaaattgacaccagagagaatcgaacatgagactttgag 75  Q
    |||||| ||| |||||||||||||||| |||||||| ||||||||||||    
T  9183164 ttagcccacccaaattgacaccagagataatcgaacctgagactttgag 9183212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 11997957 - 11997865
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| |  |||| || | ||||||||||| ||| ||||| |||||    
T  11997957 tgtatggacttagccaaccgaaattggcaccagagggaatcgaacctgagacctctagaggagcaaactccaagatcccaagccaaccactag 11997865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 9718082 - 9718173
Alignment:
Q  20 tatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||| |||||||| | | ||||||||||||||| ||||||||| |||||||||  ||| || | ||||||| ||||||  ||||| ||||||    
T  9718082 tatggacttagcccatcgaaattgacaccagagggaatcgaacttgagacttttggaggagcaaactccaatatctcaggccaaccactagg 9718173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 46572194 - 46572228
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagacttt 72  Q
    ||||||||||||||||||||||||||||| |||||    
T  46572194 aaattgacaccagagagaatcgaacatgatacttt 46572228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 47541472 - 47541406
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    |||||||||||| |||||||| ||| | | || ||||||| || |||||||||||||| ||||||||    
T  47541472 aaattgacaccaaagagaatcaaacttaaaaccttgagaggagcacactccaagatctgaaaccaac 47541406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 48199260 - 48199183
Alignment:
Q  32 ctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    ||||| |||||||||| ||||  ||||||||  |||||  ||||||| ||||||||||| ||||||||||||| |||||    
T  48199260 ctaccgaaattgacactagaggaaatcgaacccgagacactgagaga-gtacactccaaaatctcaaaccaaccactag 48199183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 3950897 - 3950974
Alignment:
Q  34 accaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaaga-tctcaaaccaactactag 110  Q
    |||||||||  ||||| || |||||||||||||||| ||||||| || || |||||||| |||||| ||||| |||||    
T  3950897 accaaaattagcaccaaagggaatcgaacatgagacattgagaggagcacgctccaagattctcaagccaaccactag 3950974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 7175955 - 7176048
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| |   ||| || | ||||||||||| ||| ||||| ||||||    
T  7175955 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagg 7176048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 7275385 - 7275292
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| |   ||| || | ||||||||||| ||| ||||| ||||||    
T  7275385 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagg 7275292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 17197043 - 17197136
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||  ||| |||||| |||||||| ||||||||| |||||| |   ||| || | ||||||||||| ||||||||| ||||||    
T  17197043 tgtatggacttagctcaccgaaattggcaccagagggaatcgaacttgagacctatggaggagcaaactccaagatcgcaaaccaaccactagg 17197136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 22119996 - 22119903
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| |   ||| || | ||||||||||| ||| ||||| ||||||    
T  22119996 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagg 22119903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 33222462 - 33222425
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgag 75  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  33222462 aaattgacaccagagagaatcgaacctgagaccttgag 33222425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 37162334 - 37162395
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgag-agaagtacactccaagatctcaa 98  Q
    |||||| |||||||||||||||||| |||||| ||||| ||||| ||||||| | |||||||    
T  37162334 aaattggcaccagagagaatcgaacttgagaccttgagaagaagcacactcccaaatctcaa 37162395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 40543003 - 40543096
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| |   ||| || | ||||||||||| ||| ||||| ||||||    
T  40543003 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagg 40543096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 47824584 - 47824621
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgag 75  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  47824584 aaattgacaccggagacaatcgaacatgagactttgag 47824621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 15137656 - 15137608
Alignment:
Q  27 ttagcctaccaaaattgacaccagagagaatcgaacatgagactttgag 75  Q
    |||||| ||| ||||||||||||||||||||| ||| |||||| |||||    
T  15137656 ttagcccacccaaattgacaccagagagaatctaacctgagaccttgag 15137608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 40332187 - 40332115
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    |||||||||||||||  |||||||| |||||| || |||| || | |||||||||| |||| ||||| |||||    
T  40332187 aaattgacaccagaggaaatcgaacctgagacctttagaggagcaaactccaagatttcaagccaaccactag 40332115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 42712061 - 42712013
Alignment:
Q  27 ttagcctaccaaaattgacaccagagagaatcgaacatgagactttgag 75  Q
    |||||| ||| |||||||||| || |||||||||||||||||| |||||    
T  42712061 ttagcccacctaaattgacactagggagaatcgaacatgagaccttgag 42712013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 34835632 - 34835541
Alignment:
Q  19 gtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    ||||| |||||||| ||| ||||||||||||||| |||||||||||||||| || |||| || | |||| |||||| ||| ||||| |||||    
T  34835632 gtatggacttagcccaccgaaattgacaccagagggaatcgaacatgagaccttaagaggagcaaactctaagatcccaagccaaccactag 34835541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 40058945 - 40059038
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||||||||||||| |||||| |  |||| || | ||||||||||| ||| ||||| ||||||    
T  40058945 tgtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagacctctagaggagcaaactccaagatcccaagccaaccactagg 40059038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 33992730 - 33992634
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactaggtca 114  Q
    |||||| |||||||| ||| |||||| |||||||||||||||||| | |||| |   ||| || | ||||||||||| ||||||||| |||||||||    
T  33992730 tgtatggacttagcccaccgaaattggcaccagagagaatcgaacctaagacctctggaggagcaaactccaagatcccaaaccaaccactaggtca 33992634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 49287964 - 49287876
Alignment:
Q  16 tttgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    |||||||| |||||||| ||| |||||| |||||||||||||||||| |||||| |   ||| || | ||||||||||| |||||||||    
T  49287964 tttgtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagacctctggaggagcaaactccaagatcccaaaccaac 49287876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 13873388 - 13873439
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||| ||||||    
T  13873388 tgtatgaacttagcctaccgaaattggcaccagagggaatcgaacctgagac 13873439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 25414195 - 25414265
Alignment:
Q  34 accaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||| || |||||||||| |||||| |||||    
T  25414195 accaaaattggcaccggggagaatcaaacctgagactttgagaggagcacactccaaggtctcaagccaac 25414265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 41621705 - 41621775
Alignment:
Q  34 accaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    |||||||||| ||||||||  |||| |||||||||| ||||||| || | ||||||||||||||| |||||    
T  41621705 accaaaattggcaccagaggaaatcaaacatgagaccttgagaggagcaaactccaagatctcaagccaac 41621775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 25852318 - 25852225
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| ||  ||| || | ||||||||||| ||| ||||| ||||||    
T  25852318 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactagg 25852225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 34844851 - 34844944
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||||||||||||| |||||| |   ||| || | ||||||||||||||| | ||| ||||||    
T  34844851 tgtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagacctctggaggagcaaactccaagatctcaagcaaaccactagg 34844944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 7949427 - 7949475
Alignment:
Q  27 ttagcctaccaaaattgacaccagagagaatcgaacatgagactttgag 75  Q
    |||||| ||| ||||||||||||||||||||||||| |||||| |||||    
T  7949427 ttagcccacctaaattgacaccagagagaatcgaacctgagaccttgag 7949475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 9646329 - 9646401
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    |||||| || ||||||||||| |||||||||| |||| || || |||||| |||||| ||||||||| |||||    
T  9646329 aaattgtcatcagagagaatcaaacatgagaccttgacaggagcacactcaaagatcccaaaccaaccactag 9646401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 5609295 - 5609346
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    |||||| |||||||| ||| |||||| |||||||||||||||||| ||||||    
T  5609295 tgtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagac 5609346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 13584349 - 13584440
Alignment:
Q  20 tatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||| |||||||| | | ||||||||||||||| ||||||||| |||||||||  ||| || | ||||||| ||||||  ||||| ||||||    
T  13584349 tatggacttagcccatcgaaattgacaccagagggaatcgaacttgagacttttggaggagcaaactccaatatctcaggccaaccactagg 13584440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 22625163 - 22625273
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactaggtcagcc 117  Q
    |||||| |||||||| ||| |||||| | |||||| ||||||||| |||||| |   ||| |||| ||||||||||| ||| ||||| |||||| || ||    
T  22625163 tgtatggacttagcccaccgaaattggctccagagggaatcgaacctgagacctctggaggagtaaactccaagatcccaagccaaccactaggccaacc 22625262  T
Q  118 tcgaattggtt 128  Q
    || ||| ||||    
T  22625263 tcaaatgggtt 22625273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 39343560 - 39343522
Alignment:
Q  36 caaaattgacaccagagagaatcgaacatgagactttga 74  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  39343560 caaaattgacaccagagagaatcgaacctgaaactttga 39343522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 40252368 - 40252310
Alignment:
Q  52 gagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    ||||||||||| |||||| |||||||||| ||||||||||||  |||  ||||||||||    
T  40252368 gagaatcgaacttgagaccttgagagaagcacactccaagattccaagtcaactactag 40252310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 41085100 - 41085050
Alignment:
Q  48 cagagagaatcgaacatgagactttgagagaagtacactccaagatctcaa 98  Q
    ||||||||||||||||| |||| |||| || || |||||||||||||||||    
T  41085100 cagagagaatcgaacattagaccttgaaaggaggacactccaagatctcaa 41085050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 12710247 - 12710190
Alignment:
Q  54 gaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    ||||||||| |||||| || ||||||| | ||||||||||| ||||||||| ||||||    
T  12710247 gaatcgaacctgagaccttaagagaagcatactccaagatcccaaaccaaccactagg 12710190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 13015519 - 13015486
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactt 71  Q
    ||||||||||| ||||||||||||||||||||||    
T  13015519 aaattgacacctgagagaatcgaacatgagactt 13015486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 37317404 - 37317453
Alignment:
Q  55 aatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    |||||||||||||| |||||||| |||| ||| ||| |||||||||||||    
T  37317404 aatcgaacatgagattttgagaggagtatacttcaaaatctcaaaccaac 37317453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 43352434 - 43352503
Alignment:
Q  35 ccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    |||| ||||||||||||||||||||||| ||||   ||||||| || | |||||| |||||||| |||||    
T  43352434 ccaagattgacaccagagagaatcgaacctgagttcttgagaggagcaaactccatgatctcaagccaac 43352503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 52983723 - 52983630
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||  |||||| |||||||| ||||||||| |||||| |   ||| || | ||||||||||||||| ||||| ||||||    
T  52983723 tgtatggacttagcccactgaaattggcaccagagggaatcgaacctgagacctctggaggagcaaactccaagatctcaagccaaccactagg 52983630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 21344918 - 21344842
Alignment:
Q  28 tagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    ||||| ||| ||||||||||  | |||||| ||||||||||| ||||||| || |||||||||| || ||| |||||    
T  21344918 tagcccacctaaattgacactggggagaattgaacatgagaccttgagaggagcacactccaaggtcccaagccaac 21344842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 23333997 - 23334033
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttga 74  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  23333997 aaattgacaccagagataatcgaacacgagactttga 23334033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 29195196 - 29195120
Alignment:
Q  28 tagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    ||||| |||||||||| ||  |||||||||||||| || ||| ||||||| || |||||||||| || ||| |||||    
T  29195196 tagccaaccaaaattggcattagagagaatcgaacttgcgaccttgagaggagcacactccaaggtcccaagccaac 29195120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 37172860 - 37172816
Alignment:
Q  32 ctaccaaaattgacaccagagagaatcgaacatgagactttgaga 76  Q
    |||||||||||||||||||||  |||||||  |||||||||||||    
T  37172860 ctaccaaaattgacaccagagtaaatcgaatttgagactttgaga 37172816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 43719158 - 43719250
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    |||||| |||||||| ||| |||||  ||| |||||||||||||| ||| || |   ||| || | ||||||||||||||||||||| |||||    
T  43719158 tgtatggacttagcccaccgaaattagcactagagagaatcgaacctgaaacctctggaggagcaaactccaagatctcaaaccaaccactag 43719250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 28672171 - 28672078
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||| | |||| |  |||| || | |||||||||||||||  |||| ||||||    
T  28672171 tgtatggacttagcccaccaaaattgacaccagagggaatcgaacctaagacctctagaggagcaaactccaagatctcaagtcaaccactagg 28672078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 17149576 - 17149635
Alignment:
Q  45 caccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    |||||||| ||||||||| |||||| ||||||| || ||||||||||||| |||||||||    
T  17149576 caccagagggaatcgaacctgagaccttgagaggagcacactccaagatcccaaaccaac 17149635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 3869791 - 3869721
Alignment:
Q  34 accaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    ||||| |||| |||| | |||||||||||||||||| |||| ||||| |||||| |||||||||| |||||    
T  3869791 accaatattggcaccggggagaatcgaacatgagaccttgatagaagcacactcgaagatctcaagccaac 3869721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 3907627 - 3907553
Alignment:
Q  36 caaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    |||||||| |||||||||||||||||| ||| |  ||||||| || |||| |||||||| ||||||||| |||||    
T  3907627 caaaattggcaccagagagaatcgaacttgaaatcttgagaggagcacaccccaagatcccaaaccaaccactag 3907553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 11448975 - 11448882
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||||||||||||| |||||| |   ||| || | ||||||||||| ||| ||||| ||||||    
T  11448975 tgtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagg 11448882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 15360191 - 15360284
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| ||  ||| || | ||||||||||| ||| ||||| ||||||    
T  15360191 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactagg 15360284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 24256799 - 24256844
Alignment:
Q  31 cctaccaaaattgacaccagagagaatcgaacatgagactttgaga 76  Q
    |||||| ||||||||||||||||||||||||| |||||| ||||||    
T  24256799 cctacctaaattgacaccagagagaatcgaacttgagaccttgaga 24256844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 33718567 - 33718643
Alignment:
Q  34 accaaaattgacaccagagagaatcgaacatgaga-ctttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    |||||||||  |||||||||||||||||| ||||| || || |||||||| ||||||||||| ||||||||| |||||    
T  33718567 accaaaatttgcaccagagagaatcgaacctgagatctctg-gagaagtaaactccaagatcccaaaccaaccactag 33718643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 6691528 - 6691588
Alignment:
Q  31 cctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaag 91  Q
    |||||| |||||| |||| ||||||||||||| |||||| ||||||| || ||||||||||    
T  6691528 cctaccgaaattggcaccggagagaatcgaacctgagaccttgagaggagcacactccaag 6691588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 28741950 - 28742010
Alignment:
Q  34 accaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatc 94  Q
    ||||||||| ||||||||  ||||||||| |||||| ||||||| || |||||||||||||    
T  28741950 accaaaattaacaccagaacgaatcgaacctgagaccttgagaggagcacactccaagatc 28742010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 11007272 - 11007177
Alignment:
Q  15 ctttgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    ||||||||| |||||||| ||| ||||||| | ||||| ||||||||| |||||| ||  ||| || | ||||||||||| ||| ||||| |||||    
T  11007272 ctttgtatggacttagcccaccgaaattgagagcagagtgaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactag 11007177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 9626134 - 9626093
Alignment:
Q  28 tagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    ||||||||| || |||||||| ||||||||||||||||||||    
T  9626134 tagcctacctaagttgacaccggagagaatcgaacatgagac 9626093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 21004832 - 21004865
Alignment:
Q  29 agcctaccaaaattgacaccagagagaatcgaac 62  Q
    |||||||||||||||||||| |||||||||||||    
T  21004832 agcctaccaaaattgacaccggagagaatcgaac 21004865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 33499569 - 33499492
Alignment:
Q  28 tagcctaccaaaattgacaccagagagaatc-gaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    ||||| ||| ||||||||||||||| ||||| |||| |||||| ||||||| || | ||||||||||| ||| |||||    
T  33499569 tagcccaccgaaattgacaccagagggaatctgaacctgagaccttgagaggagcaaactccaagatcccaagccaac 33499492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 9208336 - 9208264
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    |||||| |||||| | ||||||||| |||||| ||||||| || | ||||||||||| ||| ||||| |||||    
T  9208336 aaattggcaccagggggaatcgaacctgagaccttgagaggagcaaactccaagatcccaatccaaccactag 9208264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 9844042 - 9843950
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    |||||| ||||| || |||||||||||||||||||  | |||||| |||||| |  |||| || | ||||||||||| ||| ||||| |||||    
T  9844042 tgtatggacttaacccaccaaaattgacaccagaggaagtcgaacctgagacctctagaggagcaaactccaagatcccaagccaaccactag 9843950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 10007264 - 10007212
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaa 90  Q
    |||||||||||||||| |||| ||| |||||| ||||||| || |||||||||    
T  10007264 aaattgacaccagagataatcaaacttgagaccttgagaggaggacactccaa 10007212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 5608129 - 5608178
Alignment:
Q  20 tatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    |||| |||||||| |||||||||||||||||||||||||||| |||||||    
T  5608129 tatggacttagcccaccaaaattgacaccagagagaatcgaatatgagac 5608178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 40591267 - 40591191
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactaggtca 114  Q
    |||||| |||||||   |||| ||| |||||||||||||| || ||||||||||||||||| ||||||| |||||||    
T  40591267 aaattgccaccagaagaaatcaaacctgagactttgagaggagcacactccaagatctcaagccaactattaggtca 40591191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 8192466 - 8192537
Alignment:
Q  40 attgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||| |||||||| ||||||||| |||||| ||||||| || ||||||||||||| ||| ||||| ||||||    
T  8192466 attggcaccagagggaatcgaacctgagaccttgagaggagcacactccaagatcccaagccaaccactagg 8192537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 5394121 - 5394035
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    |||||| |||||||| | | ||||||||||||||| ||||||||| |||||| ||  ||| || | ||||||||||||||| |||||    
T  5394121 tgtatggacttagcccatcgaaattgacaccagagggaatcgaacctgagacctttggaggagcaaactccaagatctcaagccaac 5394035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 32845194 - 32845102
Alignment:
Q  19 gtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    ||||| |||||||| ||| |||||| |||||||| ||||||||| ||| |||||  ||| || | ||||||||||| ||| | ||||||||||    
T  32845194 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgaaacttttggaggagcaaactccaagatcccaagctaactactagg 32845102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 41314089 - 41314005
Alignment:
Q  25 acttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactacta 109  Q
    |||||||| ||| ||||||||||||||| ||||||||| |||||| |   ||| || | ||||||||||| ||||||||| ||||    
T  41314089 acttagcccaccgaaattgacaccagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaaaccaaccacta 41314005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 1435166 - 1435105
Alignment:
Q  27 ttagcctaccaaaattgacaccagagagaatcgaacatgagactttga-gagaagtacactcc 88  Q
    |||||| ||| ||||||||||||||||||||||||| |||||| |||| |||||| |||||||    
T  1435166 ttagcccacccaaattgacaccagagagaatcgaac-tgagaccttgaggagaagcacactcc 1435105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 4590907 - 4590973
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    |||||||| | |||||||||||| ||||| || |||||||||| |||||||| ||||| || |||||    
T  4590907 aaattgactctagagagaatcgagcatgatacattgagagaagcacactccacgatctgaagccaac 4590973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 35797567 - 35797522
Alignment:
Q  16 tttgtatgaacttagcctaccaaaattgacaccagagagaatcgaac 62  Q
    ||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  35797567 tttgtatgaactt-gcccaccaaaattgacaccagagaaaatcgaac 35797522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 25293268 - 25293219
Alignment:
Q  20 tatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    ||||||||||||| ||| |||||| |||||||| ||||||||| ||||||    
T  25293268 tatgaacttagcccaccgaaattggcaccagagggaatcgaacctgagac 25293219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 28194246 - 28194311
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaa 103  Q
    |||||| |||||||||||||||||| | |||| || |||| || ||||||||||||| ||| ||||    
T  28194246 aaattggcaccagagagaatcgaacctaagaccttaagaggagcacactccaagatcccaagccaa 28194311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 30466923 - 30467016
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| || ||||||||||||||| |||||| |  |||| |  | ||||||| ||| ||||||||| ||||||    
T  30466923 tgtatggacttagcccaccgaaattggcagcagagagaatcgaacctgagacctctagaggaacaaactccaatatcccaaaccaaccactagg 30467016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 31681127 - 31681074
Alignment:
Q  52 gagaatcgaacatgagactttga-gagaagtacactccaagatctcaaaccaac 104  Q
    ||||||||||| ||||||||||| |||||| |||||||||| |||||| |||||    
T  31681127 gagaatcgaacctgagactttgaggagaagcacactccaaggtctcaagccaac 31681074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 35203367 - 35203404
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgag 75  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  35203367 aaattgacaccaaagataatcgaacatgagactttgag 35203404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 14946882 - 14946790
Alignment:
Q  19 gtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    ||||| |||||||| ||  |||||||||||||||| |||||||| | | || ||||||| || | ||| |||||||||||  |||| ||||||    
T  14946882 gtatggacttagcccactgaaattgacaccagagaaaatcgaacctaaaaccttgagaggagcaaacttcaagatctcaagtcaaccactagg 14946790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 36242412 - 36242456
Alignment:
Q  25 acttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    |||||||| ||| ||||||||||||||| ||||||||| ||||||    
T  36242412 acttagcccaccgaaattgacaccagagggaatcgaacctgagac 36242456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 18646961 - 18646844
Alignment:
Q  14 actttgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactaggtc 113  Q
    |||||||||  |||||||| ||| |||||| |||||||||||||||||| |||||| |   |||||| | |||| |||||| ||| ||||| ||||||||    
T  18646961 actttgtatagacttagcccaccgaaattggcaccagagagaatcgaacctgagacctctggagaagcaaactcaaagatcacaagccaaccactaggtc 18646862  T
Q  114 agcctcgaattggttaaa 131  Q
    | || | ||| |||||||    
T  18646861 aaccccaaataggttaaa 18646844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 1138663 - 1138587
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactaggtca 114  Q
    |||||| ||| ||||||| |||||| | |||| ||||||| || ||||||||||||||||| ||||| |||||||||    
T  1138663 aaattggcactagagagattcgaacctaagaccttgagaggagcacactccaagatctcaagccaaccactaggtca 1138587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 1379002 - 1378926
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatc 94  Q
    |||||| |||||||| ||| |||||||||||||||  ||||||||||||||||||  ||| || | |||||||||||    
T  1379002 tgtatggacttagcccaccgaaattgacaccagaggaaatcgaacatgagacttttggaggagcaaactccaagatc 1378926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 8254845 - 8254896
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    ||||||||||||||| ||| |||||||||||||||| |||||||| ||||||    
T  8254845 tgtatgaacttagcccaccgaaattgacaccagagataatcgaacctgagac 8254896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 17447359 - 17447292
Alignment:
Q  37 aaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    ||||||| |||||||||||||| |||  ||||| || ||||||| |||||||||||||||||| ||||    
T  17447359 aaaattggcaccagagagaatcaaaccagagaccttcagagaagcacactccaagatctcaaatcaac 17447292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 8077751 - 8077637
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactaggtcagcc 117  Q
    |||||| |||||||| ||| |||||| |||||||||||||||||| |||||| |   ||| || | ||||||||||| ||| ||||| |||||| || ||    
T  8077751 tgtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaacc 8077652  T
Q  118 tcgaattggttaaaa 132  Q
     | ||| ||||||||    
T  8077651 ccaaatgggttaaaa 8077637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 168321 - 168254
Alignment:
Q  1 aagtcagaacatgactttgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    ||||||||||| | || ||||||||||||||| ||| |||||| |||||||| ||||||||| ||||||    
T  168321 aagtcagaacaag-ctctgtatgaacttagcccaccgaaattggcaccagagggaatcgaacctgagac 168254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 6127961 - 6128037
Alignment:
Q  28 tagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaac 104  Q
    ||||| |||||||||| |||| | ||||||||||| |||||| ||||||| || || ||||||| || |||||||||    
T  6127961 tagcccaccaaaattggcaccggggagaatcgaacttgagaccttgagaggagcacgctccaaggtcccaaaccaac 6128037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 1378829 - 1378774
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagat 93  Q
    |||||||||||||||| ||||||||||||||| ||  ||| |||| ||||||||||    
T  1378829 aaattgacaccagagaaaatcgaacatgagacctttggaggagtaaactccaagat 1378774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 9500448 - 9500499
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    |||||| |||||||| ||| |||||| |||||||||||||||||| ||||||    
T  9500448 tgtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagac 9500499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 15059495 - 15059546
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagac 69  Q
    |||||| |||||||| ||| |||||| |||||||||||||||||| ||||||    
T  15059495 tgtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagac 15059546  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 69
Target Start/End: Original strand, 17745240 - 17745271
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagac 69  Q
    ||||||||||||||||||||||||||||||||    
T  17745240 aaattgacaccagagagaatcgaacatgagac 17745271  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 25237066 - 25237164
Alignment:
Q  1 aagtcagaacatgactttgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaac 100  Q
    |||||||| ||  ||| |||||| |||| ||| ||| |||||| ||| |||| ||||||||| |||||| |||||||||| | ||||||||||| |||||    
T  25237066 aagtcagagcaaaactctgtatggactt-gcccaccgaaattggcactagagggaatcgaacctgagaccttgagagaagcaaactccaagatcccaaac 25237164  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 45859136 - 45859223
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaact 105  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| |  |||| || | ||||||||||| ||| ||||||    
T  45859136 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctctagaggagcaaactccaagatcccaagccaact 45859223  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 46113493 - 46113588
Alignment:
Q  16 tttgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||||| |||||||| ||| ||||||  ||||||| ||||||||| |||||| |   ||| || | ||||||||||| ||||||||| ||||||    
T  46113493 tttgtatggacttagcccaccgaaattggtaccagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaaaccaaccactagg 46113588  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 1486502 - 1486428
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactaggtca 114  Q
    |||||| ||||| || ||||||||| |||||| ||||||| ||  |||||||||||| ||| ||||| |||||||||    
T  1486502 aaattggcaccaaagggaatcgaacctgagaccttgagagtag--cactccaagatcccaagccaaccactaggtca 1486428  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 2799954 - 2799893
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttga-gagaagtacactccaagatctcaa 98  Q
    |||||| |||||||||||||||||| |||||| |||| ||| || ||||||| |||||||||    
T  2799954 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaa 2799893  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 4621330 - 4621423
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| |   ||| || | ||||||||||| ||| ||||| ||||||    
T  4621330 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagg 4621423  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 6650687 - 6650650
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgag 75  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  6650687 aaattgacaccagagagaatcgaacctgagacattgag 6650650  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 10059139 - 10059066
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||||||  |||||||||  ||| |||||||||||||| || | |||||||||||||||  |||| ||||||    
T  10059139 aaattgacattagagagaattaaacctgagactttgagaggagcaaactccaagatctcaagtcaaccactagg 10059066  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 24674497 - 24674404
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| |   ||| || | ||||||||||| ||| ||||| ||||||    
T  24674497 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagg 24674404  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 32729629 - 32729556
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| ||||| || ||||||||| |||||||||||||| || | |||| |||||| ||| ||||| ||||||    
T  32729629 aaattggcaccatagggaatcgaacctgagactttgagaggagcaaactcgaagatcccaagccaaccactagg 32729556  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 46607914 - 46607821
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| ||  ||| || | ||||||||||| |||  |||| ||||||    
T  46607914 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagtcaaccactagg 46607821  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 6471726 - 6471690
Alignment:
Q  68 actttgagagaagtacactccaagatctcaaaccaac 104  Q
    ||||||||||||| | |||||||||||||||||||||    
T  6471726 actttgagagaagcatactccaagatctcaaaccaac 6471690  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 7946941 - 7946853
Alignment:
Q  25 acttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactaggtc 113  Q
    |||||||| ||| |||||| |||||||| ||||||||| |||||| |   ||| || | ||| ||||||||||| ||||| ||||||||    
T  7946941 acttagcccaccgaaattggcaccagagggaatcgaacttgagacctctggaggagcaaacttcaagatctcaagccaaccactaggtc 7946853  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 24217062 - 24216986
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactaggtca 114  Q
    |||||| ||||| ||  |||||||| |||||| ||||||| || ||||||||||||| |||  |||| |||||||||    
T  24217062 aaattggcaccaaaggtaatcgaacctgagaccttgagaggagcacactccaagatcccaagtcaaccactaggtca 24216986  T

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Target: scaffold0576 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 5175 - 5268
Alignment:
Q  18 tgtatgaacttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactagg 111  Q
    |||||| |||||||| ||| |||||| |||||||| ||||||||| |||||| ||  ||| || | ||||||||||| ||| ||||| ||||||    
T  5175 tgtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactagg 5268  T

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Target: scaffold0074 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 69
Target Start/End: Original strand, 45743 - 45774
Alignment:
Q  38 aaattgacaccagagagaatcgaacatgagac 69  Q
    ||||||||||||||||||||||||||||||||    
T  45743 aaattgacaccagagagaatcgaacatgagac 45774  T

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Target: scaffold0140 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 29506 - 29548
Alignment:
Q  48 cagagagaatcgaacatgagactttgagagaagtacactccaa 90  Q
    ||||||||||| ||||||||||||||||||||  |||||||||    
T  29506 cagagagaatcaaacatgagactttgagagaaacacactccaa 29548  T

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Target: scaffold0049 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 66859 - 66774
Alignment:
Q  25 acttagcctaccaaaattgacaccagagagaatcgaacatgagactttgagagaagtacactccaagatctcaaaccaactactag 110  Q
    |||||||| |||||||||| |||||||  ||||||||| |||||| ||  ||| || | ||||||||||| ||| ||||| |||||    
T  66859 acttagcccaccaaaattggcaccagaaggaatcgaacgtgagacctttggaggagcaaactccaagatcccaagccaaccactag 66774  T

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