View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1180_low_12 (Length: 251)
Name: NF1180_low_12
Description: NF1180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1180_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 32668808 - 32669050
Alignment:
| Q |
1 |
tctaataaaatcagtcttctgtgtgcttcttgtttactatcttttctttttcaaggctccgg---gtataatctcaaaacttgaatatcttttcaaacaa |
97 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32668808 |
tctaataaaattagtcttgcatgtgcttcttgtttactatcttttctttttcaaggctccggcaggtataatctcaaaacttgaatatcttttcaaacaa |
32668907 |
T |
|
| Q |
98 |
tttttatggggaggaagtgagcatgtgagaaaaataaactgggttaaatgggaaagaccttatagcatagcatcaatcaatggtgcataaatccgagggt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32668908 |
tttttatggggaggaagtgagcatgtgagaaaaataaactgggttaaataggaaagaccttatagcatagcatcaatcaatggtgcataaatccgagggt |
32669007 |
T |
|
| Q |
198 |
atgtattggagttttatggtaacttgatcactcgaagcttcat |
240 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
32669008 |
atgtatgggagttttatggtgacttgatcacttgaagcttcat |
32669050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 23703151 - 23702996
Alignment:
| Q |
1 |
tctaataaaatcagtcttctgtgtgcttcttgtttactatcttttctttttcaaggctccgg---gtataatctcaaaacttgaatatcttttcaaacaa |
97 |
Q |
| |
|
|||||||||||||||||| | || ||||| |||||||| ||||| ||||||||||||| || |||||||||| |||||||||| |||||||||||| |
|
|
| T |
23703151 |
tctaataaaatcagtcttgtctgcgcttcctgtttactttctttcctttttcaaggcttcgacgagtataatctcgaaacttgaatctcttttcaaacat |
23703052 |
T |
|
| Q |
98 |
ttttt-atggggaggaagtgagcatgtgagaaaaataaactgggttaaatgggaaa |
152 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||| |
|
|
| T |
23703051 |
ttttttatggggaggaagtgaggatgtgagaaaaagaaattgggttaaatgggaaa |
23702996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 29122023 - 29121916
Alignment:
| Q |
46 |
ctttttcaaggctccgg---gtataatctcaaaacttgaatatcttttcaaacaatttttatggggaggaagtgagcatgtgagaaaaataaactgggtt |
142 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||| ||||||||||||||| | |||||||| ||||| || ||||||||||| |||||| |
|
|
| T |
29122023 |
ctttttcaaggctccgacaagtataatctctaaacttgaatctcttttcaaacaattcatgtggggagggtgtgagggggtaagaaaaataaattgggtt |
29121924 |
T |
|
| Q |
143 |
aaatggga |
150 |
Q |
| |
|
|||||||| |
|
|
| T |
29121923 |
aaatggga |
29121916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 27235299 - 27235355
Alignment:
| Q |
5 |
ataaaatcagtcttctgtgtgcttcttgtttactatcttttctttttcaaggctccg |
61 |
Q |
| |
|
|||||||||||||| | || ||||| |||||||| ||||| ||||||| |||||||| |
|
|
| T |
27235299 |
ataaaatcagtcttgtctgcgcttcctgtttactttctttcctttttcgaggctccg |
27235355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 39294463 - 39294527
Alignment:
| Q |
86 |
cttttcaaacaatttttatggggaggaagtgagcatgtgagaaaaataaactgggttaaatggga |
150 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | ||| |||||||||| ||| |||||||||| |
|
|
| T |
39294463 |
cttttcaaacaatttttatggggagggagtgaggaagtgtgaaaaataaattggattaaatggga |
39294527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 22638980 - 22638936
Alignment:
| Q |
74 |
aaacttgaatatcttttcaaacaatttttatggggaggaagtgag |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
22638980 |
aaacttgaatctcttttcaaacaatttttatggggagggagtgag |
22638936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University