View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1180_low_13 (Length: 251)
Name: NF1180_low_13
Description: NF1180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1180_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 39098682 - 39098921
Alignment:
| Q |
4 |
acgtcttcaccaaaaacctcaaaagcataaagtttatggattctcccacttatatgttgctcaacctcaaatctttcattcaatgtgagatttgaactca |
103 |
Q |
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| T |
39098682 |
acgtcttcacccaaaacttcaaa-gtataaagtttatggattctcccacttatatgttgctcaacctcaaatctttcattcaatatgagatttgaactca |
39098780 |
T |
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| Q |
104 |
cacttgatatatcgcaacacatagtttatatcaagaacaataaaggaagatattcatcgcttcattcatattgctaacaaattttctctaccttaacaat |
203 |
Q |
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| T |
39098781 |
cacttgatatatggcaacacatagttcatatcaagaacaataaaggaagatattcatcgcttccttcatattgctaacaaattttctctaccttaacaat |
39098880 |
T |
|
| Q |
204 |
aatcaataatatttaacatctttaactccacacctatgata |
244 |
Q |
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| T |
39098881 |
aatcaatgatatttaacatctttaactccacatctatgata |
39098921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 38015936 - 38015996
Alignment:
| Q |
50 |
cacttatatgttgctcaacctcaaatctttcattcaatgtgagatttgaactcacacttga |
110 |
Q |
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| T |
38015936 |
cacttatatgttgctcaacatctactattgcattcaatgtgttattttaactcacacttga |
38015996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 31819569 - 31819640
Alignment:
| Q |
37 |
ttatggattctcccacttatatgttgctcaacctcaaatctttcattcaatgtgagatttgaactcacactt |
108 |
Q |
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| T |
31819569 |
ttatggattctctcaattatatgttgttcaacctcagcacttacattcaatgtgagactttaactcacactt |
31819640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 27100211 - 27100142
Alignment:
| Q |
50 |
cacttatatgttgctcaacctcaaatctttcattcaatgt-gagatttgaactcacacttgatatatcgc |
118 |
Q |
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| T |
27100211 |
cacttatatgttattcaacctcaattctttcattcaatgtagacgttttaactcacacttaatatatcgc |
27100142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 2517421 - 2517474
Alignment:
| Q |
52 |
cttatatgttgctcaacctcaaatctttcattcaatgtgagatttgaactcaca |
105 |
Q |
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| T |
2517421 |
cttatatgttgctcaaccttaactctttcattcaatgtgggactttaactcaca |
2517474 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 52125729 - 52125677
Alignment:
| Q |
52 |
cttatatgttgctcaacctcaaatctttcattcaatgtgagatttgaactcac |
104 |
Q |
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| T |
52125729 |
cttatatattgttcaacctcaactctttcatttaatgtgagatttgtactcac |
52125677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 11442931 - 11442859
Alignment:
| Q |
34 |
agtttatggattctcccacttatatgttgctcaacctcaaatctttcattcaatgtgagatttgaactcacac |
106 |
Q |
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| T |
11442931 |
agtttatgggtcctctcacttgtatgttgctcaacctcaactcttccatccaacgtgggactttaactcacac |
11442859 |
T |
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