View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1180_low_14 (Length: 250)
Name: NF1180_low_14
Description: NF1180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1180_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 21549565 - 21549324
Alignment:
| Q |
9 |
caagaatatatcaagagcttgaacttagacaaaaatcccccaaaagagtatacaagaaaatcttcaactaaagccagtgacagtgagtgtttgctaacca |
108 |
Q |
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| T |
21549565 |
caagaatatatcaagagcttgaacttagacaaaaatcccccaaaagagtatacaagaaaatcttcaactaaagccagtgacagtgagtatttgctaacca |
21549466 |
T |
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| Q |
109 |
accaaagcacagtatcagctcagtctcagaaaggcagtgacagtgagtgtttgctatcaagcggtgattttgacgatgatatcctaaatatttgtttcga |
208 |
Q |
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| T |
21549465 |
accaaagcacaatatcagctcagtctcagaaagccaatgacagtcagtgtttgctatcaagcggtgattttgaagacgatatcctagatatttgtttcga |
21549366 |
T |
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| Q |
209 |
tgataatatgtttcaagatgggtgtaatactgattctctgct |
250 |
Q |
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| T |
21549365 |
tgataatttgtttcaagatgggtgtagtattgattctctgct |
21549324 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 34916938 - 34917004
Alignment:
| Q |
13 |
aatatatcaagagcttgaacttagacaaaaatcccccaaaagagtatacaagaaaatcttcaactaa |
79 |
Q |
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| T |
34916938 |
aatatatcaagagcttaaacctagacgaaaatcctccgaaagattatagaagaaaaccttcagctaa |
34917004 |
T |
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