View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1180_low_3 (Length: 551)

Name: NF1180_low_3
Description: NF1180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1180_low_3
NF1180_low_3
[»] chr4 (3 HSPs)
chr4 (9-456)||(33716734-33717181)
chr4 (10-78)||(53851897-53851965)
chr4 (300-338)||(9513649-9513687)
[»] chr3 (4 HSPs)
chr3 (203-260)||(43904636-43904694)
chr3 (67-119)||(18466111-18466163)
chr3 (134-170)||(21745037-21745073)
chr3 (205-260)||(30745883-30745939)
[»] chr6 (1 HSPs)
chr6 (201-267)||(26818241-26818307)
[»] chr5 (2 HSPs)
chr5 (204-260)||(38498883-38498940)
chr5 (219-251)||(38482924-38482956)
[»] chr2 (1 HSPs)
chr2 (124-172)||(38764295-38764343)


Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 9 - 456
Target Start/End: Complemental strand, 33717181 - 33716734
Alignment:
Q  9 gtgttaacactccaaatattagagaaaatgagtcatggtaatccgaaattcagttgggaggtaagtaaaacacaataaataattgtttcatccaaaaatc 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33717181 gtgttaacactccaattattagagaaaatgagtcatggtaatccgaaattcagttgggaggtaagtaaaacacaacaaataattgtttcatccaaaaatc 33717082  T
Q  109 aaacttaaattatctcgaattattaatcatttggtggagctcattaaccatgtgagctcaatcacatggataatctattacctattcaatgctactaata 208  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33717081 aaacttaaattatctcgaattattagtcatttggtggagctcattaaccatgtgagctcaatcacatggataatctattatctattcaatgctactaata 33716982  T
Q  209 aatgtgatacataaattttttggtatagtctattttcaatatacctaaattaacctcaaactattttacttaaatatgtgattcaattgctataaatatg 308  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33716981 aatgtgatacataatttttttggtatagtctattttcaatatacctaaattaacctcaaactattttacttaaatatgtgattcaattgctataaatatg 33716882  T
Q  309 catttgtttaatcctcgtatgcaaatagcagcaatcatgaatatgctaaaaaatatgaacgatatcttatcttgtcttataaaagnnnnnnnnggaacaa 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||    
T  33716881 catttgtttaatcctcgtatgcaaatagcagcaatcatgaatatgctaaaaaatatgaacgatatcttatcttgtcttataaaaaaaaaaaaaggaacaa 33716782  T
Q  409 ctttcactacaataagaaagtggattgacggtttccgctggtataaag 456  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33716781 ctttcactacaataagaaagtggattgacggtttccgctagtataaag 33716734  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 53851897 - 53851965
Alignment:
Q  10 tgttaacactccaaatattagagaaaatgagtcatggtaatccgaaattcagttgggaggtaagtaaaa 78  Q
    |||||||  ||||| | |||||| |||||  ||||| ||||||||||||| ||||||||||||||||||    
T  53851897 tgttaaccttccaatttttagaggaaatggatcatgataatccgaaattcggttgggaggtaagtaaaa 53851965  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 9513649 - 9513687
Alignment:
Q  300 ataaatatgcatttgtttaatcctcgtatgcaaatagca 338  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  9513649 ataaacatgcatttgtttaatcctcgtattcaaatagca 9513687  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 43904694 - 43904636
Alignment:
Q  203 ctaataaatgtgatacataaatt-ttttggtatagtctattttcaatatacctaaatta 260  Q
    |||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||    
T  43904694 ctaataaatgtgatacataatttattttggtatagtctattttcaatagacctaaatta 43904636  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 18466163 - 18466111
Alignment:
Q  67 aggtaagtaaaacacaataaataattgtttcatccaaaaatcaaacttaaatt 119  Q
    |||||| ||||||| || ||| ||||||||||||||||||| ||| |||||||    
T  18466163 aggtaattaaaacataacaaaaaattgtttcatccaaaaataaaaattaaatt 18466111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 21745037 - 21745073
Alignment:
Q  134 atcatttggtggagctcattaaccatgtgagctcaat 170  Q
    |||||| |||||||||||||||||| |||||||||||    
T  21745037 atcattaggtggagctcattaaccacgtgagctcaat 21745073  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 30745939 - 30745883
Alignment:
Q  205 aataaatgtgatacataaa-ttttttggtatagtctattttcaatatacctaaatta 260  Q
    |||||| | |||||||||| ||||||||||||| ||||||| | |||||||||||||    
T  30745939 aataaaagggatacataaacttttttggtatagcctatttttattatacctaaatta 30745883  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 26818241 - 26818307
Alignment:
Q  201 tactaataaatgtgatacataaattttttggtatagtctattttcaatatacctaaattaacctcaa 267  Q
    |||||||||| | ||||||||| ||| ||| ||||||||||| | ||||||||||||||| ||||||    
T  26818241 tactaataaaggggatacataattttcttgatatagtctattcttaatatacctaaattaccctcaa 26818307  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 38498883 - 38498940
Alignment:
Q  204 taataaatgtgatacataaatt-ttttggtatagtctattttcaatatacctaaatta 260  Q
    ||||||||| ||||||||| |  |||||||||| ||||||||||||| ||||||||||    
T  38498883 taataaatgggatacataattcgttttggtataatctattttcaatagacctaaatta 38498940  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 38482924 - 38482956
Alignment:
Q  219 ataaattttttggtatagtctattttcaatata 251  Q
    |||| ||||||||||||||||||||||||||||    
T  38482924 ataacttttttggtatagtctattttcaatata 38482956  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 38764295 - 38764343
Alignment:
Q  124 cgaattattaatcatttggtggagctcattaaccatgtgagctcaatca 172  Q
    ||||||||| ||| || ||||||||||||||||||  ||||||||||||    
T  38764295 cgaattattcatctttgggtggagctcattaaccacttgagctcaatca 38764343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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