View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1180_low_5 (Length: 396)
Name: NF1180_low_5
Description: NF1180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1180_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 39098580 - 39098278
Alignment:
| Q |
1 |
cgactcgatggggaagtgagaaagatttcaagtgttagataatgtacgcgaagaatcttacacttgatgaagaaatgatgtgatatgtcaaatgtgagaa |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39098580 |
cgacttgatggggaagtgagaaagatttcaagtgttagataatgtacgcgaagaatcttacacttgataaagaaatgatgtgatatgtcaaatgtgagaa |
39098481 |
T |
|
| Q |
101 |
aaaatcatacattggatgtaagagttaaagttgagcaaaatataagcaaaaaggttcataaatttaagatc-ttaagatttttggtgaagatgcggtgtt |
199 |
Q |
| |
|
||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
39098480 |
aaagtcataaattggaggtaagagttaaagttgagcaaaatataagcaaaaaggttcataaatttaagatctttaagatttttggtgaatatgcggtgtt |
39098381 |
T |
|
| Q |
200 |
caactcacttatatgttgttcttaacctaatatattaatcgaactcagtgagactcctcctcataacccaattcattgagatattcctccggaacaataa |
299 |
Q |
| |
|
|||||||||||| | |||||||||||| |||||||||||| || || |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39098380 |
caactcacttatgttttgttcttaacccaatatattaatccaattcgatgagactccttctcataacccaattcattgagatattcctccggaacaataa |
39098281 |
T |
|
| Q |
300 |
aag |
302 |
Q |
| |
|
||| |
|
|
| T |
39098280 |
aag |
39098278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University