View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1180_low_6 (Length: 343)
Name: NF1180_low_6
Description: NF1180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1180_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 43553215 - 43553547
Alignment:
| Q |
1 |
ttataggttccattctcaaatctctcacttgcttgaggctgaggcgatcttgaatcggagcttttgctaactggtggagggcttatacaatcataagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43553215 |
ttataggttccattctcaaatctctcacttgcttgaggctgaggcgatcttgaatcggagcttttgctaactggtggagggcttatacaatcataagaaa |
43553314 |
T |
|
| Q |
101 |
ccatttcagttagcacttccatttcattagggatataccttcgcgatggagaaagcctatatgctggtgagggagaattgttcttatctagttcaagtga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43553315 |
ccatttcagttagcacttccatttcattagggatataccttcgcgatggagaaagtctatatgctggtgagggagaattgttcttatctagttcaagtga |
43553414 |
T |
|
| Q |
201 |
aaatgaggaagattggatgcttcttttaccaccagctctgataaatatggcttgtagttgcctactttctacgctgtccatagcctgatcaagaatgtca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43553415 |
aaatgaggaagattggatgcttcttttaccaccagctctgataaatatggcttgtagttgcctactttctacgctgtccatagcctgatcaagaatgtca |
43553514 |
T |
|
| Q |
301 |
agtgctgtcatcccttcactattcctagtatta |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
43553515 |
agtgctgtcatcccttcactattcctagtatta |
43553547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 43549217 - 43549546
Alignment:
| Q |
1 |
ttataggttccattctcaaatctctcacttgcttgaggctgaggcgatcttgaatcggagcttttgctaactggtggagggcttatacaatcataagaaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||| ||| | || || | ||||| |||||||||||||||||||||||| |||||||||| |
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| T |
43549217 |
ttataggttccattctcaaatctctcacttacttgaggctgaggtgatatagattcagtgctttcgctaactggtggagggcttatacagtcataagaaa |
43549316 |
T |
|
| Q |
101 |
ccatttcagttagcacttccatttcattagggatataccttcgcgatggagaaagcctatatgctggtgagggagaattgttcttatctagttcaagtga |
200 |
Q |
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|||||||||| |||||||||||||| || | ||||||||||| || |||| ||||| ||| ||||||||||||| || | || |||||||||||||| |
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| T |
43549317 |
ccatttcagtcagcacttccatttccttcgatatataccttcgtgacaaagaatgcctagatgttggtgagggagaactggtgttgtctagttcaagtga |
43549416 |
T |
|
| Q |
201 |
aaatgaggaagattggatgcttcttttaccaccagctctgataaatatggcttgtagttgcctactttctacgctgtccatagcctgatcaagaatgtca |
300 |
Q |
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||| || |||| | ||||||||||||| ||| ||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||| ||| |
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| T |
43549417 |
aaaaga---agatggtgtgcttcttttacctccatctctgataaatatggcttgtagttgtctattttcggcattgtccatagcctgatcaagaatatca |
43549513 |
T |
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| Q |
301 |
agtgctgtcatcccttcactattcctagtatta |
333 |
Q |
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|| ||||| | ||||||| |||||||||||||| |
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| T |
43549514 |
agagctgtgagcccttcattattcctagtatta |
43549546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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