View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1180_low_9 (Length: 300)
Name: NF1180_low_9
Description: NF1180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1180_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 54 - 268
Target Start/End: Complemental strand, 32668825 - 32668611
Alignment:
| Q |
54 |
aagactgattttattagaacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaag |
153 |
Q |
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| T |
32668825 |
aagactaattttattagaacgattcgacctacaatgggcaattgtttattcttccacttcaacaatgttgatctgacagcctcaatcactggatgccaag |
32668726 |
T |
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| Q |
154 |
tatctaatatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctctcccaccca |
253 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32668725 |
tatctaatatcctcagatttgctctgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctctcccaccca |
32668626 |
T |
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| Q |
254 |
cctctcgaatatatt |
268 |
Q |
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||||| | ||||||| |
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| T |
32668625 |
cctctgggatatatt |
32668611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 228
Target Start/End: Complemental strand, 39294408 - 39294239
Alignment:
| Q |
59 |
tgattttattagaacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaagtatct |
158 |
Q |
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| T |
39294408 |
tgattttattaaaacgactagaccttcaatagacagttgtttattcttccactttgacaatcttgacctcactgcctcaatcactggatgccaagtattt |
39294309 |
T |
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| Q |
159 |
aatatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacatttta |
228 |
Q |
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| T |
39294308 |
attatcgtcggacttgctccgattggtaaaccaatgtacttaaacatagtggatcctattttacaattta |
39294239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 54 - 253
Target Start/End: Original strand, 23703134 - 23703333
Alignment:
| Q |
54 |
aagactgattttattagaacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaag |
153 |
Q |
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||||||||||||||||||| || | |||| ||||| ||| || |||||||||||||||||||||||||||| ||||||||||||| | ||| | | |
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| T |
23703134 |
aagactgattttattagaatgactctacctccaatgcacaaatgattattcttccacttcaacaatcttgatctcctagcctcaatcactagttgctatg |
23703233 |
T |
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| Q |
154 |
tatctaatatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctctcccaccca |
253 |
Q |
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| T |
23703234 |
tatctaatctcctaggatttgctccaataggtaaaccaagatacttaaatagagtacatcatattttacaatttaggactttagctgcctcttccaccca |
23703333 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 22639055 - 22639143
Alignment:
| Q |
71 |
aacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaagtatcta |
159 |
Q |
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||||| ||||||| |||| ||| ||||||||||||||||| ||||||||||||| | |||| ||||||| | ||||| ||||||| |
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| T |
22639055 |
aacgaattgacctcaaatgaacaagtgtttattcttccacttagacaatcttgatcctagtgccttaatcactagctgccatgtatcta |
22639143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 29122143 - 29122255
Alignment:
| Q |
146 |
atgccaagtatctaatatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctct |
245 |
Q |
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|||||| ||||||||| || || |||||||| || ||||||||||| ||||||||| || || || || ||||| ||||| | ||||||||||||| |
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| T |
29122143 |
atgccatgtatctaatctcttcggatttgctccaatcggtaaaccaaggtacttaaacggaaagaaaccaatcttacaatttaaaatattagccgcctct |
29122242 |
T |
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| Q |
246 |
cccacccacctct |
258 |
Q |
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||| |||||||| |
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| T |
29122243 |
tccaaccacctct |
29122255 |
T |
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