View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11810_high_10 (Length: 383)

Name: NF11810_high_10
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11810_high_10
NF11810_high_10
[»] chr6 (4 HSPs)
chr6 (19-373)||(10497969-10498322)
chr6 (168-285)||(2285577-2285693)
chr6 (169-284)||(27176987-27177101)
chr6 (151-259)||(20772107-20772213)
[»] chr8 (2 HSPs)
chr8 (151-284)||(42456826-42456958)
chr8 (168-284)||(41581072-41581187)
[»] chr2 (5 HSPs)
chr2 (168-284)||(5357565-5357680)
chr2 (175-284)||(29923865-29923973)
chr2 (163-284)||(6069129-6069247)
chr2 (168-286)||(11915386-11915503)
chr2 (151-248)||(27249739-27249835)
[»] chr4 (3 HSPs)
chr4 (175-284)||(45073227-45073332)
chr4 (232-281)||(43148889-43148938)
chr4 (168-284)||(18489644-18489758)
[»] chr7 (1 HSPs)
chr7 (168-279)||(2729802-2729912)
[»] chr1 (3 HSPs)
chr1 (219-272)||(28651028-28651081)
chr1 (197-284)||(22023161-22023249)
chr1 (184-287)||(42787588-42787692)


Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 10497969 - 10498322
Alignment:
Q  19 actaagttgattgatatatgatgcaaacaaagttcattttctttcttcatacaattagattagtttatgaaaagaattggaagacaaaaattatggagtg 118  Q
    ||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10497969 actaagttgattgatgtatgatgcaaactaagttcattttctgtcttcatacaattagattagtttatgaaaagaattggaagacaaaaattatggagtg 10498068  T
Q  119 tcgtttatatcttttgtccaacctttgttgagtgaaaattgctctataaacttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcga 218  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||| |||||||||||| || ||||||| |||||||| ||||||    
T  10498069 tcgtttatatcttttgtccaacctttcttgagtgaaaattgcaatataaacttctaataaagttgaaacacatcag-aaaaagacgtaaatgttcatcga 10498167  T
Q  219 caattaattgccatcggttaaaatccatcgacaattaactgtaaatgaggttatattggtaaattattgaacaacatttgcttgctcttggttcccatac 318  Q
    || |||| ||||| || ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10498168 cagttaactgccaccgtttaaaattcatcgacagttaactgtaaatgaggttatattggtaaattactgaacaacatttgcttgctcttggttcccatac 10498267  T
Q  319 gccaaaattgtagaatccattgaattttactatgtcaaacttggtcgttcctatg 373  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  10498268 gccaaaattgttgaacccattgaattttactatgtcaaacttggtcgttcctatg 10498322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 168 - 285
Target Start/End: Original strand, 2285577 - 2285693
Alignment:
Q  168 acttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgag 267  Q
    ||||| || ||||||||||||||||||||||| || |||||||||||||  || |||| | |  ||||||||||| |||||| ||| ||||||  ||||     
T  2285577 acttcaaacaaggttgaaacacattagaaaaa-gacgtaaatgtccatcagcagttaactactgtcggttaaaattcatcgataatcaactgtcgatgaa 2285675  T
Q  268 gttatattggtaaattat 285  Q
    ||||||||| ||||||||    
T  2285676 gttatattgataaattat 2285693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 27177101 - 27176987
Alignment:
Q  169 cttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgagg 268  Q
    ||||||| ||| ||||||||||||||||||| || |||||||| |||||||| |||| ||||  || ||||||| |||||| | |||||||   ||||||    
T  27177101 cttctaacaagattgaaacacattagaaaaa-gacgtaaatgttcatcgacagttaactgccgccgattaaaattcatcgatagttaactgccgatgagg 27177003  T
Q  269 ttatattggtaaatta 284  Q
    |||||||  |||||||    
T  27177002 ttatattaataaatta 27176987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 20772213 - 20772107
Alignment:
Q  151 tgaaaattgctctataaacttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgac 250  Q
    |||||||| || |||| |||| ||| ||||||||||||||  | |||||||| ||||||||  ||| ||| |||  ||||  ||||||||||||||||||    
T  20772213 tgaaaatttctgtatacacttttaacaaggttgaaacacacca-aaaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatcgac 20772116  T
Q  251 aattaactg 259  Q
    |||||||||    
T  20772115 aattaactg 20772107  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 284
Target Start/End: Original strand, 42456826 - 42456958
Alignment:
Q  151 tgaaaattgctctataaacttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgac 250  Q
    ||||||||||| |||| |||||||| |||| ||||| |||| ||||||| || |||| ||||||||||||||||| | || |||||||||||||||| ||    
T  42456826 tgaaaattgctgtatacacttctaacaaggctgaaatacatcagaaaaa-gacgtaattgtccatcgacaattaactaccgtcggttaaaatccatcaac 42456924  T
Q  251 aattaactgtaaatgaggttatattggtaaatta 284  Q
    |  ||| |    ||||||||||||||||||||||    
T  42456925 agctaattaccgatgaggttatattggtaaatta 42456958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 284
Target Start/End: Complemental strand, 41581187 - 41581072
Alignment:
Q  168 acttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgag 267  Q
    ||||| || |||| ||||||||| |||||||| || ||||||||||||||||| |||| || | | | ||||||| |||||  | ||||||||  ||||     
T  41581187 acttcaaacaaggctgaaacacactagaaaaa-gacgtaaatgtccatcgacagttaagtgtcgtagattaaaattcatcggtagttaactgttgatgaa 41581089  T
Q  268 gttatattggtaaatta 284  Q
    ||||||||| |||||||    
T  41581088 gttatattgataaatta 41581072  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 168 - 284
Target Start/End: Original strand, 5357565 - 5357680
Alignment:
Q  168 acttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgag 267  Q
    |||||||| |||| ||||||||| |||||||| || ||||||||||||||||| |||| ||    |||||||| |||||||||| |||||||   |||||    
T  5357565 acttctaacaaggctgaaacacactagaaaaa-gacgtaaatgtccatcgacagttaactgttgccggttaaattccatcgacagttaactgccgatgag 5357663  T
Q  268 gttatattggtaaatta 284  Q
    |||||||||||||||||    
T  5357664 gttatattggtaaatta 5357680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 29923865 - 29923973
Alignment:
Q  175 ataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgaggttatat 274  Q
    |||||| |||||||||  ||||||| ||  |||||||  ||||||| |||| ||||  |||||||||||||||  ||||||||||   ||||||||||||    
T  29923865 ataaggctgaaacacaacagaaaaa-gacataaatgtttatcgacagttaactgccgccggttaaaatccatcagcaattaactgccgatgaggttatat 29923963  T
Q  275 tggtaaatta 284  Q
    | ||||||||    
T  29923964 tagtaaatta 29923973  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 284
Target Start/End: Original strand, 6069129 - 6069247
Alignment:
Q  163 tataaacttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaa 262  Q
    |||| |||||||| |||| |||||||||    |||||| |||||||| |  |||| || |||||| || ||||||||||| ||||| || ||||||||      
T  6069129 tatatacttctaagaaggctgaaacacac---aaaaaaaatgtaaatttttatcggcagttaattaccgtcggttaaaattcatcggcagttaactgtcg 6069225  T
Q  263 atgaggttatattggtaaatta 284  Q
    ||||| |||||||| |||||||    
T  6069226 atgagattatattgataaatta 6069247  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 286
Target Start/End: Original strand, 11915386 - 11915503
Alignment:
Q  168 acttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgag 267  Q
    |||||||| |||  |||||||||  |||||||| |||||||||| |||||||| |||| | |   ||||||||||||||| || ||||||||  ||| ||    
T  11915386 acttctaacaagactgaaacacaccagaaaaaa-atgtaaatgttcatcgacagttaactactgccggttaaaatccatcaacgattaactgccaataag 11915484  T
Q  268 gttatattggtaaattatt 286  Q
     |||||||  |||||||||    
T  11915485 attatatttataaattatt 11915503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 27249739 - 27249835
Alignment:
Q  151 tgaaaattgctctataaacttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcg 248  Q
    ||||||||| | |||| ||||| || |||| |||||||||   ||||| |||||||||||||||||| || |||| ||||  | ||||||||||||||    
T  27249739 tgaaaattgttgtatacacttcaaacaaggctgaaacacaccggaaaa-agatgtaaatgtccatcggcagttaactgccgcctgttaaaatccatcg 27249835  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 45073332 - 45073227
Alignment:
Q  175 ataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgaggttatat 274  Q
    |||||||||||||||| |||||||| ||||||||||||||||| || |||| ||||  ||||||||||||||||    ||||||||  || |||||||||    
T  45073332 ataaggttgaaacacactagaaaaa-gatgtaaatgtccatcggcagttaactgccgccggttaaaatccatcg---gttaactgtcgataaggttatat 45073237  T
Q  275 tggtaaatta 284  Q
    ||||||||||    
T  45073236 tggtaaatta 45073227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 43148938 - 43148889
Alignment:
Q  232 tcggttaaaatccatcgacaattaactgtaaatgaggttatattggtaaa 281  Q
    |||||| |||||||||||||||||||||   |||||||||||||||||||    
T  43148938 tcggttgaaatccatcgacaattaactgccgatgaggttatattggtaaa 43148889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 284
Target Start/End: Complemental strand, 18489758 - 18489644
Alignment:
Q  168 acttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgag 267  Q
    |||||||| |||||||||| |||  ||||||| ||  |||||||| ||| ||| |||| |||| ||||||||||||||||  || |||||||   ||||     
T  18489758 acttctaacaaggttgaaatacaccagaaaaa-gacataaatgtctatc-acagttaactgccgtcggttaaaatccatcagcagttaactgccgatgaa 18489661  T
Q  268 gttatattggtaaatta 284  Q
     ||||||||||||||||    
T  18489660 attatattggtaaatta 18489644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 168 - 279
Target Start/End: Original strand, 2729802 - 2729912
Alignment:
Q  168 acttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgag 267  Q
    |||||||| |||| |||||||||  ||||||| || |||||||||||||| || |||| ||||| | ||||||||||||||| | ||||| ||  |||||    
T  2729802 acttctaacaaggctgaaacacaacagaaaaa-gacgtaaatgtccatcggcagttaactgccaccagttaaaatccatcgatagttaacagtcgatgag 2729900  T
Q  268 gttatattggta 279  Q
    ||||||||||||    
T  2729901 gttatattggta 2729912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 28651028 - 28651081
Alignment:
Q  219 caattaattgccatcggttaaaatccatcgacaattaactgtaaatgaggttat 272  Q
    ||||||||| || ||||||||||||||||| || |||||||| |||||| ||||    
T  28651028 caattaattaccgtcggttaaaatccatcggcagttaactgtcaatgagattat 28651081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 284
Target Start/End: Complemental strand, 22023249 - 22023161
Alignment:
Q  197 aaaagatgtaaatgtccatcgacaattaattgccatcggttaaaa-tccatcgacaattaactgtaaatgaggttatattggtaaatta 284  Q
    |||||| |||| ||||| |||||| |||| || | |||||||||| ||||||| || |||||||   |||||||||||| |||||||||    
T  22023249 aaaagacgtaattgtccgtcgacagttaactgtcgtcggttaaaaatccatcggcagttaactgccgatgaggttatataggtaaatta 22023161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 287
Target Start/End: Complemental strand, 42787692 - 42787588
Alignment:
Q  184 aaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgaca-attaactgtaaatgaggttatattggtaaat 282  Q
    |||||||  |||||||| | |||||| |  ||| ||| ||||||||| ||||||||||||||||| ||  |||||||   || ||||||||||| |||||    
T  42787692 aaacacaccagaaaaaaaacgtaaatatgtatcaacagttaattgccgtcggttaaaatccatcggcatgttaactgccgataaggttatattgataaat 42787593  T
Q  283 tattg 287  Q
    |||||    
T  42787592 tattg 42787588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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