View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11810_high_13 (Length: 310)

Name: NF11810_high_13
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11810_high_13
NF11810_high_13
[»] chr2 (3 HSPs)
chr2 (153-303)||(31127498-31127648)
chr2 (23-156)||(31127281-31127414)
chr2 (67-125)||(30856621-30856679)
[»] chr8 (1 HSPs)
chr8 (34-156)||(9300869-9300991)
[»] chr7 (3 HSPs)
chr7 (34-156)||(37666533-37666653)
chr7 (64-156)||(2089606-2089698)
chr7 (64-156)||(28723761-28723851)
[»] chr3 (1 HSPs)
chr3 (67-156)||(44685373-44685463)
[»] chr6 (1 HSPs)
chr6 (65-156)||(2091381-2091472)
[»] chr5 (1 HSPs)
chr5 (42-125)||(33388698-33388781)
[»] chr4 (1 HSPs)
chr4 (23-81)||(4118197-4118255)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 153 - 303
Target Start/End: Original strand, 31127498 - 31127648
Alignment:
Q  153 tcttacttgacatgttaattcttccgttgaataaagctaaaaatagaaatcaattctgacaaatcaaaaagcattacttcttgcattcgtagaaattcag 252  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  31127498 tcttacttgacatgttaattcttccgtcaaataaagctaaaaatagaaatcaattatgtcaaatcaaaaagcattacttcttgcattcgtagaaattcag 31127597  T
Q  253 ttcatcatcaagctaagccattgatatttctatgcacatgttttcttctct 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31127598 ttcatcatcaagctaagccattgatatttctatgcacatgttttctgctct 31127648  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 156
Target Start/End: Original strand, 31127281 - 31127414
Alignment:
Q  23 caacacctcaaatttaagcacactcacataaactnnnnnnnttaaaacaaaactaatttagttacatcaattaatgttattaaatttcattctcttttaa 122  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||    
T  31127281 caacacctcaaatttaagcacactcacataaactaaaaaaattaaaacaaaattaatttagtcacatcaattaatatcattaaatttcattctcttttaa 31127380  T
Q  123 tttcatccattttatgtgagtgtgtccaaatctt 156  Q
    |||| |||||||||| || |||||||||||||||    
T  31127381 tttcttccattttatatgcgtgtgtccaaatctt 31127414  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 30856621 - 30856679
Alignment:
Q  67 aaacaaaactaatttagttacatcaattaatgttattaaatttcattctcttttaattt 125  Q
    |||||||| ||||||||| |||||||||||| | ||| |||||  ||||||||||||||    
T  30856621 aaacaaaaataatttagtcacatcaattaatatcatttaatttttttctcttttaattt 30856679  T

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Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 9300869 - 9300991
Alignment:
Q  34 atttaagcacactcacataaactnnnnnnnttaaaacaaaactaatttagttacatcaattaatgttattaaatttcattctcttttaatttcatccatt 133  Q
    ||||| |||||||||||||||||       ||||| ||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  9300869 atttaggcacactcacataaactaaaaaaattaaagcaaaattaatttagtcacatcaattaatgtcattgaatttcattctcttttaatttcttccatt 9300968  T
Q  134 ttatgtgagtgtgtccaaatctt 156  Q
    |||| |||||||| | |||||||    
T  9300969 ttatctgagtgtgcctaaatctt 9300991  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 37666533 - 37666653
Alignment:
Q  34 atttaagcacactcacataaactnnnnnnnttaaaacaaaactaatttagttacatcaattaatgttattaaatttcattctcttttaatttcatccatt 133  Q
    ||||||||||||||| |||||||       ||||||||||||||||||||| |||||||||||| | ||| |||||||||||||||  ||||  ||||||    
T  37666533 atttaagcacactcatataaactaacaaaattaaaacaaaactaatttagtcacatcaattaatatcattgaatttcattctcttt--attttttccatt 37666630  T
Q  134 ttatgtgagtgtgtccaaatctt 156  Q
    ||||||||||||| |||||||||    
T  37666631 ttatgtgagtgtgcccaaatctt 37666653  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 2089606 - 2089698
Alignment:
Q  64 ttaaaacaaaactaatttagttacatcaattaatgttattaaatttcattctcttttaatttcatccattttatgtgagtgtgtccaaatctt 156  Q
    ||||| ||||||||||||||| |||||||||||| | ||| |||||||||||||||||||||  | |||||||||||||||||| ||||||||    
T  2089606 ttaaatcaaaactaatttagtaacatcaattaatatcattgaatttcattctcttttaatttttttcattttatgtgagtgtgttcaaatctt 2089698  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 28723761 - 28723851
Alignment:
Q  64 ttaaaacaaaactaatttagttacatcaattaatgttattaaatttcattctcttttaatttcatccattttatgtgagtgtgtccaaatctt 156  Q
    ||||||||||||| ||||| | ||||||||| ||   ||| |||||||||||||||||||||  |  ||||||||||||||||||||||||||    
T  28723761 ttaaaacaaaacttatttaatcacatcaattgatac-attgaatttcattctcttttaattttttt-attttatgtgagtgtgtccaaatctt 28723851  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 44685373 - 44685463
Alignment:
Q  67 aaacaaaactaatttagttacatcaattaatgttattaaatttcattctcttttaa-tttcatccattttatgtgagtgtgtccaaatctt 156  Q
    |||||||||||||||| | |||||||||||| | ||| |||||||||||||||||| |||  ||| |||||||||||||| ||||||||||    
T  44685373 aaacaaaactaatttaatcacatcaattaatatcattgaatttcattctcttttaatttttttcctttttatgtgagtgtatccaaatctt 44685463  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 2091381 - 2091472
Alignment:
Q  65 taaaacaaaactaatttagttacatcaattaatgttattaaatttcattctcttttaatttcatccattttatgtgagtgtgtccaaatctt 156  Q
    ||||| |||| ||||||| | |||||||||||| ||||| ||||| |||||||||||||||  |||||||||| ||| |||| | |||||||    
T  2091381 taaaataaaaataatttaatcacatcaattaatattattgaattttattctcttttaattttttccattttatatgaatgtgccgaaatctt 2091472  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 33388698 - 33388781
Alignment:
Q  42 acactcacataaactnnnnnnnttaaaacaaaactaatttagttacatcaattaatgttattaaatttcattctcttttaattt 125  Q
    |||||||||||||||       ||| ||||||||||||||||| |||||||||||| | ||| ||||| ||| |||||||||||    
T  33388698 acactcacataaactaaaaaaattataacaaaactaatttagtcacatcaattaatatcattgaatttaattatcttttaattt 33388781  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 4118255 - 4118197
Alignment:
Q  23 caacacctcaaatttaagcacactcacataaactnnnnnnnttaaaacaaaactaattt 81  Q
    |||||||||| |||||||||||||||||||| ||       ||||||||||||||||||    
T  4118255 caacacctcatatttaagcacactcacataatctaaaaatattaaaacaaaactaattt 4118197  T

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