View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11810_high_16 (Length: 279)
Name: NF11810_high_16
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11810_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 31897195 - 31897437
Alignment:
| Q |
29 |
tttgttacaaaatactctataaaaatgagtcaaacaaaattgatatatcttattcaaaatttgatctaaatacatcaac-tttattacctcacttctaat |
127 |
Q |
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| T |
31897195 |
tttgttacaatatattctgtaaaaatgagtcaaacaaaattgatatatcttgttcaaaatttgatctaaatatatcaaccttttttacctcacttataat |
31897294 |
T |
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| Q |
128 |
tatattttgcaaccgaagtcgtaaagaatatttgtatccccaaatgcgattctaagtcattgccaataccaaggaact-aaaaaagaaaacacattaccc |
226 |
Q |
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| T |
31897295 |
tatattttgcaaccgaagtcctaaagaatatttgtatccccaaatgcaattctaagtcattgccaataccatggaactaaaaaaaggaaacacattaccc |
31897394 |
T |
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| Q |
227 |
tcgggtgtattgaacatatatgcaatgttaatgatcttctctg |
269 |
Q |
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| T |
31897395 |
tcgggtgtattgaacatgtatgcaatgttaatgatcttctctg |
31897437 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 36352271 - 36352325
Alignment:
| Q |
59 |
caaacaaaattgatatatcttattcaaaatttgatctaaatacatcaactttatt |
113 |
Q |
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| T |
36352271 |
caaacaaaattgatgtatttgattcaaatttttaactaaatacatcaactttatt |
36352325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 9635163 - 9635102
Alignment:
| Q |
49 |
aaaaatgagtcaaacaaaattgatatatcttattcaaaatttgatctaaatacatcaacttt |
110 |
Q |
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| T |
9635163 |
aaaaatgagtcaaacaaaactgatgtatttagttcaaaatttagtccaaatacatcaacttt |
9635102 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 24014556 - 24014500
Alignment:
| Q |
54 |
tgagtcaaacaaaattgatatatcttattcaaaatttgatctaaatacatcaacttt |
110 |
Q |
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| T |
24014556 |
tgagtcaaacaaaatggatgtatttggttcaaaatttggtccaaatacatcaacttt |
24014500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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