View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11810_high_17 (Length: 248)
Name: NF11810_high_17
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11810_high_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 3004412 - 3004175
Alignment:
| Q |
11 |
atggacatctgtagatgcacaaaaggcattaagaacgagttatgaacaaatgaaaacaggaatagagtagttatattcagatagaccaatagattacata |
110 |
Q |
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| T |
3004412 |
atggacatctgtagatgcacaaaaggcattaagaacgagttataaacaaatgaaaacaggaatagagtagttatattcagatagaccaatagattacata |
3004313 |
T |
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| Q |
111 |
gttcatgtagtcacaaagaggtttatctacatgatctaaccctaggagtttaactactcatgttattttaaacataaataaaagtatatgaaaagaaata |
210 |
Q |
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| T |
3004312 |
gttcatgtagttacaaagaggtttatctacatgatctaaccctaggagtttaactactcatgttattttaaacaaaaataaaagtatatgaaaagaaata |
3004213 |
T |
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| Q |
211 |
catgaatcataatcatcgttggtcgattcctcaccttc |
248 |
Q |
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| T |
3004212 |
catgaatcataatcatcgttggtcgattcctcaccttc |
3004175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 246
Target Start/End: Original strand, 33712893 - 33713014
Alignment:
| Q |
125 |
aaagaggtttatctacatgatctaaccctaggagtttaactactcatgttattttaaacataaataaaagtatatgaaaagaaatacatgaatcataatc |
224 |
Q |
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| T |
33712893 |
aaagaggttcctctacatgacctaaacctaagaggttagattgtcatgttattctaaacataaacaaaagtatagaaaaagaaatacatgaatcttaatc |
33712992 |
T |
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| Q |
225 |
atcgttggtcgattcctcacct |
246 |
Q |
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| T |
33712993 |
actgttggtcgattcctcacct |
33713014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 242
Target Start/End: Complemental strand, 13962934 - 13962799
Alignment:
| Q |
104 |
ttacatagttcatgtagtcacaaagaggtttatctacatgatctaaccctaggagtttaactactcatgttattttaaacataaataaaagtatatgaaa |
203 |
Q |
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| T |
13962934 |
ttacatggttcaagcagtcacaaagaaggtcatctacatgacctaacc-taggaaattagcta-tcatgctatct-aaacataaacaaaagaatatgtaa |
13962838 |
T |
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| Q |
204 |
agaaatacatgaatcataatcatcgttggtcgattcctc |
242 |
Q |
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| T |
13962837 |
aacaatacgtgaatcatgatcaccgtgggtcgattcctc |
13962799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 202
Target Start/End: Complemental strand, 2570930 - 2570814
Alignment:
| Q |
86 |
ttcagatagaccaatagattacatagttcatgtagtcacaaagaggtttatctacatgatctaaccctaggagtttaactactcatgttattttaaacat |
185 |
Q |
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|||| |||||||||||||||||| | |||| ||||| ||| ||||| | ||| ||||| ||||||||| | |||||||||||||||| || |||||| |
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| T |
2570930 |
ttcaaatagaccaatagattacacatttcaagtagttacagagagggtcgtcttcatgacctaaccctaaaaatttaactactcatgttgttctaaacaa |
2570831 |
T |
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| Q |
186 |
aaataaaagtatatgaa |
202 |
Q |
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| T |
2570830 |
aaacaaaagtatatgaa |
2570814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 35411417 - 35411453
Alignment:
| Q |
181 |
aacataaataaaagtatatgaaaagaaatacatgaat |
217 |
Q |
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| T |
35411417 |
aacataaataaaagtatatgtaaagaaatacatgaat |
35411453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 9692320 - 9692425
Alignment:
| Q |
136 |
tctacatgatctaaccctaggagtttaactactcatgttattttaaacataaataaaagtatatgaaaagaaatacatgaatcataatcatcgttggtcg |
235 |
Q |
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|||||||||| |||||| ||||||| || ||||||||||| |||||||||| |||||||||||| | ||||| |||||| || ||| |||||||||| |
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| T |
9692320 |
tctacatgattgtaccctaagagtttagctcctcatgttattctaaacataaacaaaagtatatgagagtaaatatatgaattatgatcgtcgttggtcg |
9692419 |
T |
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| Q |
236 |
attcct |
241 |
Q |
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| |||| |
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| T |
9692420 |
actcct |
9692425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 16678395 - 16678337
Alignment:
| Q |
190 |
aaaagtatatgaaaagaaatacatgaatcataatcatcgttggtcgattcctcaccttc |
248 |
Q |
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| T |
16678395 |
aaaagtatatgagaagaaatacatgaatattaatcatcattagtcgatttctcaccttc |
16678337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 16029622 - 16029550
Alignment:
| Q |
174 |
tattttaaacataaataaaagtatatgaaaagaaatacatgaatcataatcatcgttggtcgattcctcacct |
246 |
Q |
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| T |
16029622 |
tattctaaacataaacaaaagtatatgaaaactaatacagaaatcgtaatcatcgttggctgattcctcacct |
16029550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 9830495 - 9830421
Alignment:
| Q |
164 |
ctactcatgttattttaaacataaataaaagtatatgaaaagaaatacatgaatcataatcatcgttggtcgatt |
238 |
Q |
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| T |
9830495 |
ctactcatgatattttaaacctaaacaaaataatatgtatagaaatacatgaattgtaagcatcgttggttgatt |
9830421 |
T |
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