View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11810_high_18 (Length: 247)
Name: NF11810_high_18
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11810_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 31218823 - 31219040
Alignment:
| Q |
20 |
tgaatgtccttcattatcagcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctca |
119 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218823 |
tgaatgtccttcattatcagcagcattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctca |
31218922 |
T |
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| Q |
120 |
gtgtgactagactctccactttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctcttaggtttttcctaggaactcct |
219 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31218923 |
gtgtgattggactctccactttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctctgaggtttttcctaggaactcct |
31219022 |
T |
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| Q |
220 |
tggcctcctcaacctttg |
237 |
Q |
| |
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|||||||||||||||||| |
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| T |
31219023 |
tggcctcctcaacctttg |
31219040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 31213068 - 31213285
Alignment:
| Q |
20 |
tgaatgtccttcattatcagcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctca |
119 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31213068 |
tgaatgtccttcattatcagcagcattctgctcaccttcttcaaacttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctca |
31213167 |
T |
|
| Q |
120 |
gtgtgactagactctccactttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctcttaggtttttcctaggaactcct |
219 |
Q |
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| T |
31213168 |
gtgtgaatggaatctccactttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctctgaggtttttcctaggaactcct |
31213267 |
T |
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| Q |
220 |
tggcctcctcaacctttg |
237 |
Q |
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|||||||||||||||||| |
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| T |
31213268 |
tggcctcctcaacctttg |
31213285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 47896406 - 47896189
Alignment:
| Q |
20 |
tgaatgtccttcattatcagcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctca |
119 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47896406 |
tgaatgtccttcattatcagcagcattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctca |
47896307 |
T |
|
| Q |
120 |
gtgtgactagactctccactttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctcttaggtttttcctaggaactcct |
219 |
Q |
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|||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47896306 |
gtgtgattggattctccactttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctctgaggtttttcctaggaactcct |
47896207 |
T |
|
| Q |
220 |
tggcctcctcaacctttg |
237 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
47896206 |
tggcctcctcaacctttg |
47896189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 4958263 - 4958377
Alignment:
| Q |
20 |
tgaatgtccttcattatcagcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctca |
119 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||| | || ||||||||||| |
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| T |
4958263 |
tgaatgtccttcactatcagcagcattctgctcaccttcagcaatcttagaagtttgtgcacgttgtcgcttccttgtactgttaccagtagctttctca |
4958362 |
T |
|
| Q |
120 |
gtgtgactagactct |
134 |
Q |
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|||||||| |||||| |
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| T |
4958363 |
gtgtgactggactct |
4958377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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