View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11810_high_3 (Length: 656)

Name: NF11810_high_3
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11810_high_3
NF11810_high_3
[»] chr3 (1 HSPs)
chr3 (7-641)||(3004568-3005200)


Alignment Details
Target: chr3 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 7 - 641
Target Start/End: Original strand, 3004568 - 3005200
Alignment:
Q  7 tcaaattgaagtccactatcatattatcaaaattaaattcattttgtttaccaacttttatataatttgtaaaactgaaaataacaagcagcacaagggg 106  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3004568 tcaaattgaagtccactatcatattatccaaatgaaattcattttgtttaccaaattttatataatttgtaaaactgaaaataacaagcagcacaagggg 3004667  T
Q  107 taaaataacttacttttattacaataagtacaatcttccttgaaatagttcttgctaaaaggaaattatccctagtttttctttgtgacaagaaggaaag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3004668 taaaataacttacttttattacaataagtacaatcttccttgaaatagttcttgctaaaaggaaattaaccctagtttttctttgtgacaagaaggaaag 3004767  T
Q  207 taaccctannnnnnnnnattgatacaagacaaaaatataaaatgttacnnnnnnnncaatctgaagagtcttgtgatcggaactatatccctctgagttc 306  Q
    ||||||||         |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| ||||||||||||||||    
T  3004768 taaccctatttttttt-attgatacaagacaaaaatataaaatgttacaaaaaaa-caatctgaagagtcttgtgatcggaaccatatccctctgagttc 3004865  T
Q  307 ttttattttattttgttttccataggtttcttttactaaaggtaattctattcgaagcactgtcagacataaaatgtaggtagctctctcggtcgcagcc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3004866 ttttattttattttgttttccataggtttcttttactaaaggtaattctattcgaagcactgtcagacgtaaaatgtaggtagctctctcggtcgcagcc 3004965  T
Q  407 gagtttcaaacctttgtttgccacattgtgtgagtttaaacctctcttatgctcgattcaaccctgttggatatccctttgatattggattccatgtaac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3004966 gagtttcaaacctttgtttgccacattgtgtgagtttaaacctctcttatgctcgattcaaccctgttggatatccctttgatattggattccatgtaac 3005065  T
Q  507 tcttttatctcaatttcaagatgtatgtattatataattagtcaaatgatcttccttcaaaatcaggttctaattggttatagttgttgtcctgaggcaa 606  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3005066 tcttttatctcattttcaagatgtatgtattatataattagtcaaatgatcttccttcaaaatcaggttctaattggttatagttgttgtcctgaggcaa 3005165  T
Q  607 cctgatcaagacagcaagacctgaaggaaaaattg 641  Q
    ||||||||||||||||||||||| |||||||||||    
T  3005166 cctgatcaagacagcaagacctggaggaaaaattg 3005200  T

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