View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11810_high_7 (Length: 482)
Name: NF11810_high_7
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11810_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 29452635 - 29452975
Alignment:
| Q |
19 |
ggaagaggcttggatgtgcattgagaaataaaggagctagatttgatttactttcaaactatagtaataataatcattattattacgttaataatagtaa |
118 |
Q |
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| T |
29452635 |
ggaagaggcttggatgtgcattgagaaataaaggagctagatttgatttactttcaaactatagtaataataatcattattgttacgttaataatagtaa |
29452734 |
T |
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| Q |
119 |
ggttaggtaaatgcaattgagcatttgtttagtttacattttgaatggatttgcagatccggtacattcaacataggatagttcatagtgtgactataat |
218 |
Q |
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| T |
29452735 |
ggttaggtaaatgcaattgagcaattgtttagtttacattttgaatggatttgcagatccggtacattcaacataggatagttcatagtgtgactataat |
29452834 |
T |
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| Q |
219 |
tttcaattttgggtgtgtagtttttcacgtaccatacagattcacagtttgtatatgaatgatgaatcacaatattgatacaatctagctaattcatctt |
318 |
Q |
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| T |
29452835 |
tttcaattttgggtgtgtagtttttcacgtaccatacagattcacagtttgtatatgaatgatgaatcacaatattgatacaatctagctaattcatctt |
29452934 |
T |
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| Q |
319 |
tgcttttacacccatttgtgttttttaagaaatattttagc |
359 |
Q |
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| T |
29452935 |
tgcttttacacccatttgttttttttaagaaatattttagc |
29452975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 468
Target Start/End: Original strand, 29453048 - 29453091
Alignment:
| Q |
425 |
gtgggtgtaagttaacaactaccgcacaaaacaacccgttactc |
468 |
Q |
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| T |
29453048 |
gtgggtgtaagttaacaacttccgcaaaaaacaacccgttactc |
29453091 |
T |
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