View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11810_high_9 (Length: 441)
Name: NF11810_high_9
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11810_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 216 - 400
Target Start/End: Original strand, 11833802 - 11833985
Alignment:
| Q |
216 |
tctctctatatgtatgtctcttagttgttggattaatccaacttctagccataacgcaaaagagatgattacatggacgagtagcgtaggagaggatcca |
315 |
Q |
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| T |
11833802 |
tctctctatatgtatgtctcttagttgttggattaatccaacttctagccataacgcaaaagagatgattacatggacgagtagcgtaggagaggatcca |
11833901 |
T |
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| Q |
316 |
gatcctagatatttcaaatttaagaccgattccttatgtatataatattttcaaattcaatgcagtaatgaaaaataaagtcaat |
400 |
Q |
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| T |
11833902 |
gatccta-atatttcaaatttaagaccgattccttatgtatataatattttcaaattcaatgcagtaatgaaaaataaagtcaat |
11833985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 11833574 - 11833775
Alignment:
| Q |
6 |
tcaatgagatggacatcaacgttgcagatccgaaagtatggaaaactatgcatagtggcaaagccaccgttcacacgataatgccccacattcaaaatcc |
105 |
Q |
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| T |
11833574 |
tcaatgatctggacatcaacgttgcagatccgaaagtatggaaagctatgcatagtggcgaagccaccgttgacacgataatgccccacattcaaaatcc |
11833673 |
T |
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| Q |
106 |
atgtcattgacgtcatgcattgtcgttagatggataacggttatgggtgaaatggtagaaagatttcttcctagtgctttctagatctctttgttcgggt |
205 |
Q |
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| T |
11833674 |
atgtcatcgacgtcatgcattgtcgttagatggataacggttatgggtgaaatggtagagagatttcttcctagtgctttctagatctctttgttcgggt |
11833773 |
T |
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| Q |
206 |
tc |
207 |
Q |
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| T |
11833774 |
tc |
11833775 |
T |
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